# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ri7A 174 6.48e-20 2fsaA 174 8.46e-20 1e6iA 121 1.81e-19 a.29.2.1 16969 1eqfA 280 1.87e-19 a.29.2.1,a.29.2.1 16972,16973 2ossA 127 3.30e-19 2dwwA 114 6.91e-19 2grcA 129 7.20e-19 2nxbA 123 1.05e-18 2r0yA 311 1.23e-18 2oo1A 113 2.47e-18 1x0jA 122 4.62e-18 1tuoA 464 1.230 1pcaA 95 1.722 d.58.3.1 39063 2bl0C 142 2.691 1e3aB 560 4.579 2ha9A 446 5.537 2guyA 478 7.298 b.71.1.1,c.1.8.1 135754,135755 2f3yA 148 7.504 2h5gA 463 8.761 2eh6A 375 10.14 1mvwC 147 10.37 i.15.1.1 79525 1mw7A 240 10.83 e.39.1.1 79557 3c3kA 285 11.47 1oohA 126 13.34 a.39.2.1 93383 1h2eA 207 13.89 c.60.1.1 70857 1fr2B 134 14.14 d.4.1.1 83257 1vjpA 394 14.30 c.2.1.3,d.81.1.3 100828,100829 1a28A 256 14.86 a.123.1.1 19290 1f07A 321 15.20 c.1.16.3 59560 1ykdA 398 16.65 1qtwA 285 17.74 c.1.15.1 29392 2a4dA 160 19.91 d.20.1.1 126152 1ggzA 148 20.99 a.39.1.5 70176 2iygA 124 21.89 2b7oA 464 22.00 c.1.10.8 128047 2z0xA 158 22.21 3bqyA 209 24.32 1ry6A 360 24.73 c.37.1.9 98090 1cnzA 363 24.85 c.77.1.1 35061 1vk2A 204 26.71 c.18.1.2 100845 1jf9A 408 26.74 c.67.1.3 62931 1n1tA 641 27.58 b.29.1.15,b.68.1.1 79821,79822 3bghA 236 27.60 1g9gA 629 28.19 a.102.1.2 83279 2o5gA 148 29.59 3clwA 507 30.61 2odlA 373 30.67 2eo0A 147 30.87 2eo5A 419 30.88 1mb3A 124 31.00 c.23.1.1 78907 2nynA 565 31.81 1d9cA 121 32.96 a.26.1.3 16901 2b5tI 432 33.53 e.1.1.1 127905 1auiB 169 34.34 a.39.1.5 17325 2rfmA 192 35.50 1s99A 200 36.96 d.58.48.2 112046 1zjaA 557 39.50 1gt91 357 40.64 1jvnA 555 42.40 c.1.2.1,c.23.16.1 67355,67356 3c61A 314 43.32 3bmaA 407 44.64 1ea9C 583 45.60 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 1b43A 340 46.40 a.60.7.1,c.120.1.2 18092,33362 1a4pA 96 47.35 a.39.1.2 17176 2hxvA 360 47.76 c.71.1.2,c.97.1.2 136859,136860 2yy8A 201 48.14 2qkpA 151 49.46 2gykB 134 50.91 d.4.1.1 135857 2nt0A 497 52.39 b.71.1.2,c.1.8.3 138561,138562 2fyxA 143 53.43 d.58.57.1 134411 1l5oA 356 53.48 c.39.1.1 77711 2bonA 332 57.20 1ek6A 348 57.96 c.2.1.2 29800 3tmkA 216 59.64 c.37.1.1 31920 1qydA 313 59.99 c.2.1.2 96583 1ohvA 472 60.30 c.67.1.4 93031 1bf2 750 61.30 1x9dA 538 61.91 a.102.2.1 121810 2jg2A 422 62.41 1sr7A 259 62.99 a.123.1.1 105957 2scpA 174 66.68 a.39.1.5 17256 2yxxA 386 67.01 2juaA 102 67.87 1a3c 181 68.20 1i2sA 282 70.10 e.3.1.1 71104 2rgyA 290 70.19 1d0cA 444 70.93 d.174.1.1 64769 1vluA 468 71.59 c.82.1.1 108864 2dpmA 284 73.06 c.66.1.28 34246 1w77A 228 74.38 c.68.1.13 120679 2gauA 232 75.09 a.4.5.4,b.82.3.2 134894,134895 2zblA 421 75.13 2c61A 469 77.17 1brwA 433 78.14 a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1tc5A 194 78.18 c.110.1.1 106752 2p5qA 170 79.16 1mkfA 382 80.33 b.116.1.1 79232 1ds1A 324 80.47 b.82.2.2 28127 1ylnA 252 80.89 b.45.2.1,b.45.2.2 123657,123658 1uhgA 385 82.34 e.1.1.1 88491 3c2gA 619 82.47 1yghA 164 82.57 d.108.1.1 40802 1vqqA 646 82.61 d.17.4.5,d.175.1.1,e.3.1.1 114009,114010,114011 2gmfA 127 82.98 a.26.1.2 16849 1vkmA 297 83.34 c.138.1.1 108670 1n2sA 299 83.46 c.2.1.2 79857 2fvyA 309 83.50 c.93.1.1 134227 3ceiA 213 83.50 1gqzA 274 83.79 d.21.1.1,d.21.1.1 83311,83312 2iksA 293 83.98 1hlqA 75 84.23 g.35.1.1 83613 1b65A 375 85.29 d.154.1.1 42020 1gppA 237 86.08 b.86.1.2 76262 1f06A 320 86.32 c.2.1.3,d.81.1.3 59556,59557 1c8uA 285 86.37 d.38.1.3,d.38.1.3 38547,38548 1lmb3 92 88.97 2e67A 264 89.30 1m7xA 617 89.81 b.1.18.2,b.71.1.1,c.1.8.1 78749,78750,78751