# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2r0yA 311 5.89e-26 2fsaA 174 5.89e-26 2ri7A 174 6.67e-26 1e6iA 121 6.84e-26 a.29.2.1 16969 2ossA 127 1.61e-25 1eqfA 280 2.77e-25 a.29.2.1,a.29.2.1 16972,16973 2grcA 129 3.58e-25 2dwwA 114 1.04e-24 2nxbA 123 2.63e-24 1x0jA 122 3.79e-24 2oo1A 113 7.28e-24 1pcaA 95 0.6121 d.58.3.1 39063 1m55A 197 0.7652 d.89.1.3 74469 1mc0A 368 1.508 d.110.2.1,d.110.2.1 78937,78938 1emvB 134 1.750 d.4.1.1 37135 1fr2B 134 2.582 d.4.1.1 83257 1h2eA 207 3.093 c.60.1.1 70857 2gykB 134 3.400 d.4.1.1 135857 1n7oA 721 3.441 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1alvA 173 3.983 a.39.1.8 17370 1oohA 126 4.876 a.39.2.1 93383 1fuiA 591 4.883 b.43.2.1,c.85.1.1 25674,35444 2okjA 504 8.320 2fug7 129 9.99 2iygA 124 10.13 1d9cA 121 10.77 a.26.1.3 16901 1eguA 731 11.70 a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 1q6hA 224 12.05 d.26.1.1 95975 2vlqB 134 12.21 2rgyA 290 12.58 1a4pA 96 12.85 a.39.1.2 17176 1hlqA 75 14.94 g.35.1.1 83613 2qu7A 288 17.23 2dsjA 423 17.46 2f7tA 227 17.54 1n12A 138 18.55 b.2.3.2 79779 3bblA 287 19.10 2olrA 540 21.02 c.91.1.1,c.109.1.1 139140,139141 1ukuA 102 22.67 d.58.5.2 99533 1t2bA 397 23.22 3c3kA 285 24.77 2iksA 293 25.20 1lmb3 92 25.88 1lwjA 441 26.60 b.71.1.1,c.1.8.1 74303,74304 2a6mA 155 27.06 d.58.57.1 126287 1m40A 263 27.12 e.3.1.1 74437 3brqA 296 27.72 1o97C 264 33.71 c.26.2.3 81232 2eo5A 419 34.36 2cx5A 158 34.43 1l7vA 326 34.99 f.22.1.1 73672 1p1lA 102 36.34 d.58.5.2 87695 1yghA 164 39.65 d.108.1.1 40802 1ksoA 101 40.90 a.39.1.2 72926 1eq2A 310 41.09 c.2.1.2 29814 1rh6A 55 41.14 a.6.1.7 104935 3bilA 348 41.40 2f9iA 327 45.78 2d9mA 69 46.37 1z52A 470 46.84 d.169.1.2,f.8.1.1 124445,124446 2z0xA 158 47.93 2jisA 515 49.15 1colA 204 49.26 f.1.1.1 43378 2o42A 144 50.59 2cxhA 217 50.68 c.51.1.2 131005 3cs3A 277 51.32 1vd5A 377 51.49 a.102.1.7 108518 1efvB 255 52.69 c.26.2.3 31634 2jbyA 145 54.22 1naqA 112 54.74 d.58.5.2 91761 1s99A 200 54.97 d.58.48.2 112046 2o20A 332 55.67 2qniA 219 56.14 2b7oA 464 58.61 c.1.10.8 128047 1kr4A 125 58.70 d.58.5.2 72889 2z3tA 425 59.13 1wveC 80 59.42 a.3.1.1 121335 2zfyA 234 60.15 1nzaA 103 64.77 d.58.5.2 86444 2nynA 565 65.31 2f0xA 148 65.53 d.38.1.5 132673 1x1iA 752 67.70 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 1mkfA 382 69.82 b.116.1.1 79232 1ii2A 524 70.08 c.91.1.1,c.109.1.1 66146,66147 3bhyA 283 71.81 1m4zA 238 74.61 b.34.12.1 78630 2hipA 72 78.33 g.35.1.1 44991 1pm6A 72 78.90 a.6.1.7 94894 1t0hB 224 79.63 c.37.1.1 106208 1k94A 165 81.84 a.39.1.8 68333 2nuhA 118 82.45 2fyxA 143 83.14 d.58.57.1 134411 1g6aA 271 83.18 e.3.1.1 42704 1jf9A 408 84.65 c.67.1.3 62931 1sgoA 139 84.77 d.82.3.1 98857 2qacA 146 85.19 1oscA 126 86.44 d.58.5.2 93490 1n82A 331 86.47 c.1.8.3 91703 1dqeA 137 89.22 a.39.2.1 17388 1auiB 169 89.86 a.39.1.5 17325