# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2r0yA	311	1.22e-22		
2ri7A	174	3.09e-22		
2fsaA	174	3.17e-22		
1e6iA	121	3.62e-22	a.29.2.1	16969
2ossA	127	3.74e-22		
1eqfA	280	5.91e-22	a.29.2.1,a.29.2.1	16972,16973
2grcA	129	6.89e-22		
2dwwA	114	2.95e-21		
2nxbA	123	3.81e-21		
1x0jA	122	4.47e-21		
2oo1A	113	1.60e-20		
1mc0A	368	1.271	d.110.2.1,d.110.2.1	78937,78938
1pcaA	95	1.927	d.58.3.1	39063
1m55A	197	2.126	d.89.1.3	74469
1h2eA	207	4.385	c.60.1.1	70857
1emvB	134	5.787	d.4.1.1	37135
1fr2B	134	6.163	d.4.1.1	83257
1alvA	173	6.393	a.39.1.8	17370
1oohA	126	8.227	a.39.2.1	93383
1n7oA	721	10.02	a.102.3.2,b.24.1.1,b.30.5.2	80259,80260,80261
2eo5A	419	10.52		
1eguA	731	14.39	a.102.3.2,b.24.1.1,b.30.5.2	18850,23899,24423
2okjA	504	14.65		
2gykB	134	15.89	d.4.1.1	135857
2olrA	540	16.01	c.91.1.1,c.109.1.1	139140,139141
1hlqA	75	16.70	g.35.1.1	83613
2dsjA	423	16.84		
2fug7	129	17.26		
2iygA	124	17.85		
1mkfA	382	18.51	b.116.1.1	79232
1a4pA	96	20.84	a.39.1.2	17176
1d9cA	121	22.13	a.26.1.3	16901
1s9uA	207	22.74	a.184.1.1	105390
1wveC	80	27.78	a.3.1.1	121335
2cjlA	204	31.05		
1lwjA	441	31.69	b.71.1.1,c.1.8.1	74303,74304
2iksA	293	33.56		
3bblA	287	34.06		
1ksoA	101	34.10	a.39.1.2	72926
2rgyA	290	34.31		
2d9mA	69	36.67		
1n12A	138	37.74	b.2.3.2	79779
3c3kA	285	38.45		
1ukuA	102	39.39	d.58.5.2	99533
1p1lA	102	39.46	d.58.5.2	87695
1naqA	112	40.90	d.58.5.2	91761
1kr4A	125	41.49	d.58.5.2	72889
3brqA	296	42.65		
1n82A	331	43.43	c.1.8.3	91703
2vlqB	134	44.76		
1m40A	263	44.84	e.3.1.1	74437
1q6hA	224	48.51	d.26.1.1	95975
1rvkA	382	57.95	c.1.11.2,d.54.1.1	97928,97929
2f7tA	227	58.08		
3bilA	348	58.47		
1yreA	197	58.91	d.108.1.1	123919
2o20A	332	60.72		
2z0xA	158	63.87		
2qu7A	288	65.07		
2eh6A	375	65.21		
1t2bA	397	65.52		
1s99A	200	67.33	d.58.48.2	112046
2a3dA	73	67.64	k.9.1.1	46424
1wybA	392	67.93		
1lmb3	92	68.00		
1fuiA	591	68.37	b.43.2.1,c.85.1.1	25674,35444
2j9iA	421	70.20		
2pfcA	183	72.31		
2nuhA	118	73.68		
1nzaA	103	78.00	d.58.5.2	86444
2f0xA	148	84.90	d.38.1.5	132673
2dokA	186	85.52		
1ypxA	375	85.75		
1sgoA	139	85.98	d.82.3.1	98857
1jf9A	408	87.89	c.67.1.3	62931