# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2fsaA 174 5.30e-26 1e6iA 121 6.65e-26 a.29.2.1 16969 2r0yA 311 7.24e-26 2ri7A 174 7.41e-26 2ossA 127 7.96e-26 1eqfA 280 1.29e-25 a.29.2.1,a.29.2.1 16972,16973 2grcA 129 2.76e-25 1x0jA 122 1.18e-24 2nxbA 123 1.58e-24 2dwwA 114 1.58e-24 2oo1A 113 7.08e-24 1m55A 197 0.5934 d.89.1.3 74469 1mc0A 368 0.7973 d.110.2.1,d.110.2.1 78937,78938 1h2eA 207 1.023 c.60.1.1 70857 1pcaA 95 1.142 d.58.3.1 39063 1emvB 134 2.108 d.4.1.1 37135 1fr2B 134 2.145 d.4.1.1 83257 1n7oA 721 3.523 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1oohA 126 3.549 a.39.2.1 93383 2gykB 134 3.649 d.4.1.1 135857 1alvA 173 3.796 a.39.1.8 17370 1a4pA 96 7.552 a.39.1.2 17176 2fug7 129 7.814 1eguA 731 8.554 a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 2dsjA 423 9.512 1mkfA 382 11.66 b.116.1.1 79232 3bblA 287 13.49 2okjA 504 15.07 1n82A 331 15.22 c.1.8.3 91703 2rgyA 290 17.37 1kr4A 125 18.20 d.58.5.2 72889 1lwjA 441 18.68 b.71.1.1,c.1.8.1 74303,74304 2iygA 124 18.91 2eo5A 419 18.98 1d9cA 121 19.68 a.26.1.3 16901 2vlqB 134 19.91 2olrA 540 20.57 c.91.1.1,c.109.1.1 139140,139141 1fuiA 591 20.66 b.43.2.1,c.85.1.1 25674,35444 3brqA 296 21.24 1p1lA 102 21.68 d.58.5.2 87695 1hlqA 75 21.70 g.35.1.1 83613 1ukuA 102 22.35 d.58.5.2 99533 1naqA 112 22.95 d.58.5.2 91761 1s99A 200 25.10 d.58.48.2 112046 2f7tA 227 25.21 1q6hA 224 26.03 d.26.1.1 95975 1nzaA 103 26.88 d.58.5.2 86444 2iksA 293 26.89 3cs3A 277 27.63 2qu7A 288 30.65 1rh6A 55 30.99 a.6.1.7 104935 2nuhA 118 33.78 1ypxA 375 34.36 1lmb3 92 35.49 2o20A 332 36.28 2z0xA 158 36.40 1m40A 263 38.78 e.3.1.1 74437 2z3tA 425 39.57 1z52A 470 40.99 d.169.1.2,f.8.1.1 124445,124446 1n12A 138 44.02 b.2.3.2 79779 1ksoA 101 46.20 a.39.1.2 72926 2cx5A 158 49.88 1s9uA 207 54.72 a.184.1.1 105390 2eh6A 375 55.82 1t2bA 397 57.94 3bilA 348 60.42 1ii2A 524 60.98 c.91.1.1,c.109.1.1 66146,66147 1sgoA 139 61.04 d.82.3.1 98857 1el6A 219 64.31 d.182.1.1 42606 2qniA 219 64.31 3c3kA 285 64.76 2h61A 92 64.79 a.39.1.2 136169 2qf2A 624 65.76 1zxkA 98 66.32 2fafA 608 66.60 1c8uA 285 68.24 d.38.1.3,d.38.1.3 38547,38548 2pfcA 183 68.67 1wybA 392 68.98 1jf9A 408 69.66 c.67.1.3 62931 2hipA 72 73.29 g.35.1.1 44991 2d9mA 69 73.93 1b0yA 85 74.01 g.35.1.1 44980 1o97C 264 78.05 c.26.2.3 81232 2inpL 89 80.05 2cxhA 217 81.29 c.51.1.2 131005 1oscA 126 82.26 d.58.5.2 93490 1wveC 80 84.23 a.3.1.1 121335 1fm2B 520 86.06 1l4dB 122 87.23 d.15.5.1 77684 1vhsA 175 88.71 d.108.1.1 100698 1ekgA 127 89.37 d.82.2.1 40021 2aotA 292 89.73 c.66.1.19 127098