# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2fsaA	174	5.09e-26		
2ri7A	174	6.43e-26		
2r0yA	311	6.53e-26		
1e6iA	121	6.79e-26	a.29.2.1	16969
2ossA	127	7.58e-26		
1eqfA	280	9.38e-26	a.29.2.1,a.29.2.1	16972,16973
2grcA	129	2.84e-25		
2nxbA	123	9.16e-25		
2dwwA	114	9.72e-25		
1x0jA	122	1.15e-24		
2oo1A	113	5.40e-24		
1mc0A	368	0.8303	d.110.2.1,d.110.2.1	78937,78938
1pcaA	95	1.153	d.58.3.1	39063
1h2eA	207	1.497	c.60.1.1	70857
1m55A	197	1.545	d.89.1.3	74469
1fr2B	134	1.721	d.4.1.1	83257
1emvB	134	1.785	d.4.1.1	37135
2gykB	134	2.924	d.4.1.1	135857
1alvA	173	3.403	a.39.1.8	17370
1oohA	126	3.777	a.39.2.1	93383
1n7oA	721	4.339	a.102.3.2,b.24.1.1,b.30.5.2	80259,80260,80261
2okjA	504	5.171		
1eguA	731	7.960	a.102.3.2,b.24.1.1,b.30.5.2	18850,23899,24423
2fug7	129	7.996		
1d9cA	121	9.423	a.26.1.3	16901
2dsjA	423	10.23		
2eo5A	419	11.19		
2f0xA	148	16.53	d.38.1.5	132673
2z0xA	158	17.10		
1lwjA	441	18.03	b.71.1.1,c.1.8.1	74303,74304
2vlqB	134	18.84		
3bblA	287	18.88		
1mkfA	382	19.44	b.116.1.1	79232
1q6hA	224	19.48	d.26.1.1	95975
2olrA	540	21.31	c.91.1.1,c.109.1.1	139140,139141
2rgyA	290	23.70		
1a4pA	96	23.89	a.39.1.2	17176
1fuiA	591	24.52	b.43.2.1,c.85.1.1	25674,35444
3c3kA	285	24.72		
2iksA	293	25.02		
1m40A	263	26.78	e.3.1.1	74437
1lmb3	92	28.41		
1ksoA	101	28.44	a.39.1.2	72926
3brqA	296	29.14		
2iygA	124	32.03		
1hlqA	75	32.30	g.35.1.1	83613
2cjlA	204	32.31		
1n82A	331	35.00	c.1.8.3	91703
2f7tA	227	40.33		
1jf9A	408	41.20	c.67.1.3	62931
2cx5A	158	41.70		
1vhsA	175	43.43	d.108.1.1	100698
2o20A	332	46.66		
2bepA	159	46.67	d.20.1.1	128385
2qu7A	288	47.22		
1ii2A	524	49.02	c.91.1.1,c.109.1.1	66146,66147
1rh6A	55	49.50	a.6.1.7	104935
1naqA	112	50.73	d.58.5.2	91761
2cxhA	217	50.77	c.51.1.2	131005
3cs3A	277	53.00		
2d9mA	69	53.62		
1zwwA	256	55.68	a.238.1.1	125750
2pfcA	183	58.49		
3bilA	348	60.51		
1n12A	138	61.13	b.2.3.2	79779
2qniA	219	62.71		
2z3tA	425	62.88		
2j9iA	421	63.18		
1s99A	200	63.56	d.58.48.2	112046
1ukuA	102	65.86	d.58.5.2	99533
1kr4A	125	66.27	d.58.5.2	72889
1o97C	264	67.50	c.26.2.3	81232
1yreA	197	67.50	d.108.1.1	123919
1efvB	255	68.03	c.26.2.3	31634
1eq2A	310	68.87	c.2.1.2	29814
1sgoA	139	69.68	d.82.3.1	98857
2hipA	72	69.98	g.35.1.1	44991
1m4zA	238	70.89	b.34.12.1	78630
1t2bA	397	71.21		
2dgkA	452	73.80		
2inpL	89	73.98		
2qf2A	624	76.48		
1ekgA	127	78.47	d.82.2.1	40021
2fafA	608	82.06		
2jisA	515	85.94		
1j3bA	529	86.73	c.91.1.1,c.109.1.1	77071,77072
1pm6A	72	87.51	a.6.1.7	94894
2eh6A	375	89.38