# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1e6iA	121	3.92e-21	a.29.2.1	16969
2fsaA	174	4.90e-21		
2ri7A	174	7.94e-21		
2ossA	127	1.19e-20		
2r0yA	311	2.32e-20		
2grcA	129	3.33e-20		
1x0jA	122	5.49e-20		
2dwwA	114	5.75e-20		
2nxbA	123	6.61e-20		
2oo1A	113	1.16e-19		
1eqfA	280	1.02e-18	a.29.2.1,a.29.2.1	16972,16973
1pcaA	95	1.305	d.58.3.1	39063
1alvA	173	2.172	a.39.1.8	17370
1hlqA	75	5.589	g.35.1.1	83613
1emvB	134	9.015	d.4.1.1	37135
1fr2B	134	9.431	d.4.1.1	83257
1k94A	165	10.74	a.39.1.8	68333
1m55A	197	12.17	d.89.1.3	74469
2olrA	540	13.73	c.91.1.1,c.109.1.1	139140,139141
2z14A	133	14.59		
1wjtA	103	15.29	a.48.3.1	114711
1vlbA	907	16.60	a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1	108739,108740,108741,108742
1lwjA	441	16.62	b.71.1.1,c.1.8.1	74303,74304
2qacA	146	17.61		
1ii2A	524	18.74	c.91.1.1,c.109.1.1	66146,66147
2ovkC	159	26.13		
1auiB	169	26.21	a.39.1.5	17325
1y1xA	191	28.37	a.39.1.8	116374
1np8A	159	30.01	a.39.1.8	92022
2fug7	129	30.64		
2yy8A	201	31.52		
2cx5A	158	33.41		
2gykB	134	35.67	d.4.1.1	135857
2o3aA	178	36.04		
1r62A	160	36.07	d.122.1.3	104816
2qrdA	137	41.54		
2z0xA	158	43.16		
2ge3A	170	43.29	d.108.1.1	135044
1fiqC	763	44.55	d.41.1.1,d.133.1.1	38588,41418
2ooxA	137	47.86		
2o5gA	148	48.00		
1cshA	435	49.66	a.103.1.1	18880
1mvwC	147	54.08	i.15.1.1	79525
1s99A	200	54.53	d.58.48.2	112046
1lmb3	92	54.79		
1tkeA	224	54.85	d.15.10.1,d.67.1.1	112470,112471
2f3yA	148	55.37		
2gwhA	298	60.40		
2j9iA	421	63.18		
1n12A	138	64.88	b.2.3.2	79779
1nmsA	249	66.72	c.17.1.1	85879
3b9jC	763	67.39		
2vlqB	134	68.37		
1zu2A	158	69.43	a.118.8.1	125662
2qfeA	148	71.90		
1ksoA	101	73.52	a.39.1.2	72926
1ip9A	85	74.65	d.15.2.2	62638
1l4dB	122	75.07	d.15.5.1	77684
2r4iA	123	76.34		
2ftwA	521	79.59	b.92.1.3,c.1.9.6	134083,134084
2e1dA	331	82.39		
1oohA	126	83.57	a.39.2.1	93383
1ayl	541	85.36		
2nuhA	118	86.85		
2iygA	124	87.21		
1p1lA	102	89.64	d.58.5.2	87695