# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1e6iA	121	2.09e-20	a.29.2.1	16969
2r0yA	311	4.54e-20		
2ri7A	174	5.32e-20		
2fsaA	174	5.58e-20		
2ossA	127	2.03e-19		
2grcA	129	2.07e-19		
1eqfA	280	3.79e-19	a.29.2.1,a.29.2.1	16972,16973
2dwwA	114	6.65e-19		
2nxbA	123	7.70e-19		
2oo1A	113	8.78e-19		
1x0jA	122	1.30e-18		
1oohA	126	4.397	a.39.2.1	93383
1alvA	173	4.420	a.39.1.8	17370
1hlqA	75	7.667	g.35.1.1	83613
1r6uA	437	7.966	c.26.1.1	97163
1m55A	197	9.685	d.89.1.3	74469
1pcaA	95	11.11	d.58.3.1	39063
2olrA	540	13.22	c.91.1.1,c.109.1.1	139140,139141
1emvB	134	14.20	d.4.1.1	37135
2dokA	186	15.43		
1mc0A	368	16.55	d.110.2.1,d.110.2.1	78937,78938
1yreA	197	16.68	d.108.1.1	123919
1n7oA	721	17.31	a.102.3.2,b.24.1.1,b.30.5.2	80259,80260,80261
1wjtA	103	18.88	a.48.3.1	114711
1wveC	80	19.14	a.3.1.1	121335
1fr2B	134	20.57	d.4.1.1	83257
2qacA	146	21.71		
2zblA	421	21.94		
2ovkC	159	22.56		
2bl0C	142	22.68		
1mvwC	147	22.95	i.15.1.1	79525
1y1xA	191	24.26	a.39.1.8	116374
1ii2A	524	25.96	c.91.1.1,c.109.1.1	66146,66147
1p1lA	102	33.63	d.58.5.2	87695
2d9mA	69	34.75		
1nzaA	103	37.10	d.58.5.2	86444
1mkfA	382	42.03	b.116.1.1	79232
2hipA	72	42.38	g.35.1.1	44991
1a28A	256	42.62	a.123.1.1	19290
1h2eA	207	42.94	c.60.1.1	70857
1zy7A	403	44.24		
1sqnA	261	45.64	a.123.1.1	105944
1sr7A	259	45.70	a.123.1.1	105957
1np8A	159	45.84	a.39.1.8	92022
1puoA	170	46.89	a.101.1.1,a.101.1.1	95134,95135
1ukuA	102	47.89	d.58.5.2	99533
1lmb3	92	48.21		
1auiB	169	48.68	a.39.1.5	17325
1n3bA	216	48.73	c.37.1.1	79959
1s99A	200	49.28	d.58.48.2	112046
2j9iA	421	50.88		
1s7zA	117	51.05	a.159.3.1	98715
1d9cA	121	52.44	a.26.1.3	16901
2cxhA	217	53.07	c.51.1.2	131005
1ddfA	127	53.39	a.77.1.2	18423
2qhqA	125	53.68		
2f9iA	327	54.66		
1htjF	210	57.55	a.91.1.1	61254
1lwjA	441	57.62	b.71.1.1,c.1.8.1	74303,74304
1f4qA	165	57.69	a.39.1.8	17360
1eguA	731	59.41	a.102.3.2,b.24.1.1,b.30.5.2	18850,23899,24423
1vp7A	100	62.53	a.7.13.1	113941
2fug7	129	68.04		
3bghA	236	70.27		
1fm2B	520	70.71		
1k94A	165	70.94	a.39.1.8	68333
1naqA	112	71.10	d.58.5.2	91761
1zu2A	158	71.17	a.118.8.1	125662
2inpL	89	74.31		
1hpi	71	74.84		
2z0xA	158	77.53		
2jdiH	146	78.72	a.2.10.1,b.93.1.1	138273,138274
2gmfA	127	79.24	a.26.1.2	16849
1jx2B	315	79.26	c.37.1.8	67404
2nuhA	118	80.08		
2aucA	126	81.03		
2gykB	134	81.41	d.4.1.1	135857
2gviA	204	83.59		
1vd5A	377	88.03	a.102.1.7	108518
2nx8A	179	89.92