# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1e6iA 121 5.19e-14 a.29.2.1 16969 2fsaA 174 2.48e-13 2dwwA 114 3.19e-13 2ri7A 174 4.81e-13 2grcA 129 4.97e-13 2ossA 127 5.56e-13 2nxbA 123 5.88e-13 1x0jA 122 3.07e-12 2oo1A 113 4.13e-12 1eqfA 280 2.65e-11 a.29.2.1,a.29.2.1 16972,16973 2r0yA 311 4.36e-10 1t0hB 224 6.032 c.37.1.1 106208 1sqnA 261 6.744 a.123.1.1 105944 1pq1A 196 8.161 f.1.4.1 94986 1oohA 126 11.33 a.39.2.1 93383 1ivnA 190 13.31 c.23.10.5 83719 2g9wA 138 13.47 1o17A 345 13.63 a.46.2.1,c.27.1.1 80765,80766 1p1xA 260 14.20 c.1.10.1 104060 3c8mA 331 14.23 1gs5A 258 14.81 c.73.1.2 70395 2z26A 347 17.90 2gm5A 139 18.79 3clqA 421 19.73 1ulyA 192 19.93 a.4.5.58 113297 2gxaA 274 20.22 2cc0A 195 20.29 c.6.2.3 130209 2gmfA 127 21.99 a.26.1.2 16849 2cycA 375 22.51 1rztA 331 22.96 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 2bcqA 335 23.17 a.60.6.1,a.60.12.1,d.218.1.2 128304,128305,128306 2qg3A 208 24.67 1af3 196 25.89 1ggzA 148 26.89 a.39.1.5 70176 2r5uA 200 27.38 1vkmA 297 27.93 c.138.1.1 108670 1w8sA 263 28.03 c.1.10.1 120744 1g3qA 237 28.25 c.37.1.10 60237 1hc7A 477 28.63 c.51.1.1,d.104.1.1,d.68.5.1 60938,60939,60940 1qjcA 158 32.84 c.26.1.3 63328 16vpA 366 32.96 d.180.1.1 42601 2jgnA 185 34.42 1bpyA 335 34.73 a.60.6.1,a.60.12.1,d.218.1.2 17980,75819,75820 1ojxA 263 34.91 c.1.10.1 93164 1t3lA 337 34.98 b.34.2.1,c.37.1.1 106358,106359 1xl3C 92 35.26 a.243.1.1 122104 1tqxA 227 35.36 c.1.2.2 112614 2o14A 375 35.82 2p2wA 367 38.01 1b16A 254 38.22 c.2.1.2 29875 1xx4A 261 38.44 c.14.1.3 116138 1vpbA 451 39.96 d.283.1.1 113950 2h09A 155 41.26 1sbyA 254 41.36 c.2.1.2 118930 1sg4A 260 41.99 c.14.1.3 118957 1g0sA 209 42.12 d.113.1.1 60187 1xm3A 264 42.15 c.1.31.1 115461 1xmxA 385 42.21 c.52.1.26 115568 2j66A 428 44.10 2grrA 161 45.15 1exrA 148 46.59 a.39.1.5 17299 1sd4A 126 46.60 a.4.5.39 105428 1q1vA 70 48.01 a.159.4.1 104479 1iirA 415 48.24 c.87.1.5 62453 1e7rA 321 48.25 c.2.1.2 29808 2bepA 159 48.74 d.20.1.1 128385 2i5hA 205 50.73 2olpA 152 51.14 2oblA 347 52.93 2rfaA 232 55.92 1svdM 110 57.09 d.73.1.1 119059 1sfjA 238 57.45 c.1.10.1 112075 2b8tA 223 57.55 c.37.1.24,g.39.1.14 128109,128110 1cy9A 264 58.24 e.10.1.1 43236 2qmcA 377 58.56 2nqoA 376 61.14 d.153.1.6 138473 1r0mA 375 61.65 c.1.11.2,d.54.1.1 104747,104748 1u9aA 160 61.82 d.20.1.1 38333 1py5A 326 61.82 d.144.1.7 104389 1gmxA 108 61.87 c.46.1.3 65355 1sjdA 368 61.93 c.1.11.2,d.54.1.1 105632,105633 2pfkA 320 62.07 c.89.1.1 35577 3c6qA 311 63.25 1gw5S 142 63.47 d.110.4.2 70633 1i1wA 303 63.68 c.1.8.3 76732 1f0lA 535 64.42 b.2.1.1,d.166.1.1,f.1.2.1 22377,42239,43382 2o3bB 136 64.55 d.221.1.1 138902 1yixA 265 64.62 c.1.9.12 123371 2fgeA 995 65.38 d.185.1.1,d.185.1.1,d.185.1.1,d.185.1.1 133430,133431,133432,133433 1h97A 147 66.44 a.1.1.2 60812 2ekfA 61 66.82 1ydnA 295 68.50 2eg6A 347 69.24 2h3hA 313 69.32 2q35A 243 69.54 1m3uA 264 69.74 c.1.12.8 84784 2dtxA 264 70.21 2fe7A 166 70.54 d.108.1.1 133325 2zc8A 369 70.73 1b79A 119 73.44 a.81.1.1 18451 2bv9A 290 73.47 c.1.8.3 129242 1a28A 256 73.48 a.123.1.1 19290 1pcaA 95 74.55 d.58.3.1 39063 1xppA 115 74.69 d.74.3.2 115768 2a61A 145 75.09 a.4.5.28 126187 1rscI 111 76.75 d.73.1.1 118620 1xi3A 215 76.93 c.1.3.1 109601 2f6kA 307 76.95 c.1.9.15 133047 1yyaA 250 77.03 1n0qA 93 77.53 k.37.1.1 79754 2iueA 212 79.05 2iyfA 430 80.13 2yvqA 143 80.23 1rblI 109 81.96 d.73.1.1 118599 1g0oA 283 82.13 c.2.1.2 60181 1vp7A 100 82.18 a.7.13.1 113941 2gukA 120 82.51 1wv2A 265 82.63 c.1.31.1 114910 2ewfA 610 82.85 1csh 435 82.91 3cs3A 277 83.88 1nmuB 104 85.01 d.79.3.1 80666 1j79A 347 85.16 c.1.9.4 62675 1iuhA 198 85.39 d.61.1.2 83711 1k8kF 168 85.78 d.198.2.1 68312 2e0nA 259 86.89 1br1B 150 87.14 a.39.1.5 17309 1im8A 244 87.61 c.66.1.14 66212 2it2A 200 88.72 1sjyA 159 89.23 d.113.1.1 98900 1ta3B 303 89.33 c.1.8.3 106732 1ug3A 339 89.66 a.118.1.14,a.118.1.14 119671,119672 2hw6A 307 89.82