Best Alignments for TR429

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2qqrA	7.0292e+00	2qqrA/TR429-2qqrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2bkdN	9.4523e+00	2bkdN/TR429-2bkdN-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2hqxA	1.5304e+01	2hqxA/TR429-2hqxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.9.1
1mhnA	1.8946e+01	1mhnA/TR429-1mhnA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.9.1
1em2A	3.2639e+01	1em2A/TR429-1em2A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.129.3.2
1wgsA	3.3829e+01	1wgsA/TR429-1wgsA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.13.3
2dkoB	4.4084e+01	2dkoB/TR429-2dkoB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2gfaA	4.4354e+01	2gfaA/TR429-2gfaA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.9.1 b.34.9.1
1g5vA	5.6305e+01	1g5vA/TR429-1g5vA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.9.1
1qtnB	5.7940e+01	1qtnB/TR429-1qtnB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2yrvA	5.9023e+01	2yrvA/TR429-2yrvA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2j01E	6.3187e+01	2j01E/TR429-2j01E-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2f5kA	6.5593e+01	2f5kA/TR429-2f5kA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.13.3
1sc3B	6.6491e+01	1sc3B/TR429-1sc3B-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1z1zA	6.7110e+01	1z1zA/TR429-1z1zA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.323.1.1
1vqoB	6.7598e+01	1vqoB/TR429-1vqoB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.43.3.2
1s96A	7.2087e+01	1s96A/TR429-1s96A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.1
1zxfA	7.3897e+01	1zxfA/TR429-1zxfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.129.3.5
1nmeB	7.4061e+01	1nmeB/TR429-1nmeB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1pfbA	7.5807e+01	1pfbA/TR429-1pfbA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.13.2

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001