# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1g5vA 88 0.4953 b.34.9.1 60292 2qqrA 118 0.5472 1mhnA 59 0.6805 b.34.9.1 84964 2gfaA 119 2.184 b.34.9.1,b.34.9.1 135089,135090 2eqkA 85 2.810 2f5kA 102 4.535 b.34.13.3 132995 2hqxA 246 4.633 b.34.9.1 136675 2eryA 172 7.550 c.37.1.8 132306 1ris 101 8.263 1zc1A 208 10.08 2fhdA 153 10.83 1louA 101 10.96 d.58.14.1 39323 1wgsA 133 11.30 b.34.13.3 114622 2dkoB 103 14.38 1nmeB 92 14.60 2egvA 229 16.10 2bkdN 134 17.38 1v6zA 228 19.55 b.122.1.2,c.116.1.5 113551,113552 1vqoK 132 20.85 b.39.1.1 120372 1qtnB 95 21.59 1o6gA 710 23.91 b.69.7.1,c.69.1.4 81087,81088 1ecxA 384 24.17 c.67.1.3 34431 2av9A 147 24.81 d.38.1.1 127365 1vhyA 257 25.33 b.122.1.2,c.116.1.5 100714,100715 2j5aA 110 25.36 2e6iA 64 26.42 1sk4A 163 27.00 d.118.1.1 105664 3cz8A 319 27.12 1kmkA 406 30.16 c.67.1.3 68696 1xnzA 264 31.69 d.127.1.1 115673 1ehsA 48 32.75 g.2.1.1 43998 2yrvA 117 33.07 1dz1A 70 36.03 b.34.13.2 37473 1vqoB 338 40.30 b.43.3.2 120363 1vqoA 240 40.38 b.34.5.3,b.40.4.5 120361,120362 2psoA 237 40.86 1nxzA 246 41.73 b.122.1.2,c.116.1.5 86391,86392 1bcpC 199 43.98 b.40.2.1,d.169.1.2 25121,42430 1ul7A 102 44.53 d.129.6.1 99540 1cqmA 101 45.30 d.58.14.1 39321 1rkiA 102 46.40 d.308.1.2 118776 2r55A 231 48.36 1eg5A 384 48.80 c.67.1.3 34429 1danT 80 48.99 b.1.2.1 21953 2j01E 206 49.70 1vmbA 140 51.65 d.58.14.1 113672 2dt5A 211 51.83 a.4.5.38,c.2.1.12 131708,131709 2a5dA 175 52.09 c.37.1.8 126172 1kbvA 327 52.90 b.6.1.3,b.6.1.3 68395,68396 1v5sA 126 53.04 d.129.6.1 108384 1xcbA 211 54.87 a.4.5.38,c.2.1.12 109552,109553 1j9qA 341 55.61 b.6.1.3,b.6.1.3 62765,62766 1e7uA 961 57.31 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1x24A 180 58.00 1nmsA 249 58.03 c.17.1.1 85879 1kk1A 410 59.32 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 2a25A 193 60.09 2opkA 112 62.90 1jfxA 217 63.93 c.1.8.8 62943 1zd9A 188 64.29 c.37.1.8 124938 1lp3A 519 66.24 b.121.5.2 74169 2dkhA 639 67.77 1sc3B 88 67.97 1r61A 207 70.44 c.8.8.1 97138 1o0xA 262 71.00 d.127.1.1 80755 1fsiA 189 73.21 d.61.1.1 39536 1yoaA 159 73.50 b.45.1.2 123775 2yyoA 171 74.77 2q83A 346 75.39 1bngA 110 76.12 d.1.1.2 36184 2b6hA 192 77.07 c.37.1.8 127994 1z85A 234 77.30 1v3fA 120 77.84 a.4.5.31 100289 1pyoB 105 77.87 1rovA 857 81.41 a.119.1.1,b.12.1.1 97674,97675 3cewA 125 81.50 1griA 217 83.03 b.34.2.1,b.34.2.1,d.93.1.1 24531,24532,40473 1j6uA 469 86.60 c.5.1.1,c.59.1.1,c.72.2.1 77094,77095,77096 1jdpA 441 88.16 c.93.1.1 62906