# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1g5vA	88	0.4175	b.34.9.1	60292
1mhnA	59	0.7776	b.34.9.1	84964
2qqrA	118	0.8022		
2gfaA	119	3.009	b.34.9.1,b.34.9.1	135089,135090
2eryA	172	4.265	c.37.1.8	132306
2eqkA	85	4.972		
2hqxA	246	5.104	b.34.9.1	136675
2f5kA	102	6.371	b.34.13.3	132995
2bkdN	134	10.78		
2fhdA	153	11.22		
1zc1A	208	12.30		
1ris	101	12.87		
1louA	101	13.68	d.58.14.1	39323
2p0pA	126	20.16		
1kbvA	327	23.13	b.6.1.3,b.6.1.3	68395,68396
1vqoK	132	23.86	b.39.1.1	120372
1nmeB	92	24.41		
1o6gA	710	24.61	b.69.7.1,c.69.1.4	81087,81088
1vqoA	240	27.92	b.34.5.3,b.40.4.5	120361,120362
2dkoB	103	27.97		
3cewA	125	28.14		
1v6zA	228	30.45	b.122.1.2,c.116.1.5	113551,113552
2yrvA	117	32.02		
1danT	80	33.26	b.1.2.1	21953
1qtnB	95	35.03		
1wgsA	133	36.42	b.34.13.3	114622
2av9A	147	39.33	d.38.1.1	127365
1ecxA	384	40.28	c.67.1.3	34431
1yoaA	159	40.60	b.45.1.2	123775
2a5dA	175	45.51	c.37.1.8	126172
2j5aA	110	45.85		
2egvA	229	46.52		
1x24A	180	48.08		
1ehsA	48	48.27	g.2.1.1	43998
1xnzA	264	48.74	d.127.1.1	115673
2qckA	167	51.25		
1fsiA	189	51.49	d.61.1.1	39536
2e6iA	64	53.72		
1eg5A	384	54.06	c.67.1.3	34429
1xcbA	211	54.06	a.4.5.38,c.2.1.12	109552,109553
1jdpA	441	55.58	c.93.1.1	62906
2hazA	105	57.19	b.1.2.1	136303
1cqmA	101	57.30	d.58.14.1	39321
1kmkA	406	59.35	c.67.1.3	68696
1vhyA	257	64.17	b.122.1.2,c.116.1.5	100714,100715
1n7oA	721	64.37	a.102.3.2,b.24.1.1,b.30.5.2	80259,80260,80261
1bb9	115	66.62		
1rovA	857	67.19	a.119.1.1,b.12.1.1	97674,97675
2dt5A	211	69.32	a.4.5.38,c.2.1.12	131708,131709
1j6uA	469	70.12	c.5.1.1,c.59.1.1,c.72.2.1	77094,77095,77096
1v3fA	120	72.88	a.4.5.31	100289
1x1iA	752	73.18	a.102.3.2,b.24.1.1,b.30.5.2	121584,121585,121586
1khcA	147	73.83	b.34.9.2	68608
1jj2A	239	74.90	b.34.5.3,b.40.4.5	63084,63085
1y9lA	115	79.39		
1vqoB	338	79.71	b.43.3.2	120363
2ii1A	301	80.57		
1sk4A	163	83.93	d.118.1.1	105664
1rkiA	102	84.38	d.308.1.2	118776
1s96A	219	85.34	c.37.1.1	98740
2psoA	237	85.87		
1j0hA	588	86.00	b.1.18.2,b.71.1.1,c.1.8.1	77027,77028,77029
2r55A	231	86.09		
1o0xA	262	86.38	d.127.1.1	80755
1lcyA	325	87.19	b.36.1.4,b.47.1.1	73834,73835
2j01E	206	87.60		
1sc3B	88	88.71