# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qqrA 118 0.1513 1g5vA 88 0.2144 b.34.9.1 60292 1mhnA 59 0.2251 b.34.9.1 84964 2gfaA 119 0.9321 b.34.9.1,b.34.9.1 135089,135090 2f5kA 102 1.569 b.34.13.3 132995 1j0hA 588 2.182 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 2bkdN 134 2.806 1h3gA 601 2.838 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 2j5aA 110 2.952 1j6uA 469 3.816 c.5.1.1,c.59.1.1,c.72.2.1 77094,77095,77096 7taa 478 4.451 2eqkA 85 4.728 2psoA 237 5.350 1wgsA 133 5.546 b.34.13.3 114622 1kbvA 327 5.670 b.6.1.3,b.6.1.3 68395,68396 2fhdA 153 6.156 1g8lA 411 6.512 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1jdpA 441 6.689 c.93.1.1 62906 1vqoA 240 6.855 b.34.5.3,b.40.4.5 120361,120362 2egvA 229 7.071 1cr5A 189 7.603 b.52.2.3,d.31.1.1 26931,38465 1y9lA 115 8.729 1vqoK 132 8.962 b.39.1.1 120372 1ris 101 9.107 1louA 101 9.397 d.58.14.1 39323 2av9A 147 9.769 d.38.1.1 127365 1ji2A 585 9.818 b.1.18.2,b.71.1.1,c.1.8.1 71672,71673,71674 2p0pA 126 10.11 1nmeB 92 10.29 1v6zA 228 10.44 b.122.1.2,c.116.1.5 113551,113552 2hqxA 246 10.45 b.34.9.1 136675 1qtnB 95 10.51 2dkoB 103 10.95 1lcyA 325 11.80 b.36.1.4,b.47.1.1 73834,73835 1griA 217 11.95 b.34.2.1,b.34.2.1,d.93.1.1 24531,24532,40473 2yrvA 117 13.28 1vc3B 97 13.48 1r7aA 504 13.52 b.71.1.1,c.1.8.1 97192,97193 1ul7A 102 13.55 d.129.6.1 99540 1n7oA 721 13.76 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1zc1A 208 14.09 1yoaA 159 15.42 b.45.1.2 123775 1xcbA 211 15.91 a.4.5.38,c.2.1.12 109552,109553 2bjrA 368 16.01 b.169.1.1,b.169.1.1 128628,128629 3c2qA 345 16.45 1l1jA 239 17.64 b.47.1.1 84516 1c5cH 215 18.20 b.1.1.1,b.1.1.2 20475,21439 1r61A 207 18.65 c.8.8.1 97138 1v5sA 126 18.67 d.129.6.1 108384 1vhyA 257 18.70 b.122.1.2,c.116.1.5 100714,100715 2opkA 112 18.91 2qckA 167 19.91 1dq3A 454 20.26 b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1cqmA 101 20.33 d.58.14.1 39321 1x24A 180 20.43 1j9qA 341 20.56 b.6.1.3,b.6.1.3 62765,62766 2r55A 231 20.74 1z85A 234 21.52 2eryA 172 21.58 c.37.1.8 132306 1bb9 115 21.75 1danT 80 22.34 b.1.2.1 21953 1x1iA 752 22.47 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 1m1lA 236 24.25 d.260.1.1 91166 1vmbA 140 24.68 d.58.14.1 113672 1g8kA 825 24.75 b.52.2.2,c.81.1.1 26920,35328 1p0yA 444 24.77 a.166.1.1,b.85.7.3 87654,87655 1jj2A 239 25.28 b.34.5.3,b.40.4.5 63084,63085 2h21A 440 25.38 a.166.1.1,b.85.7.3 135976,135977 1nxzA 246 27.56 b.122.1.2,c.116.1.5 86391,86392 1q3lA 69 27.63 b.34.13.2 111652 2gw4B 162 28.89 1d2oA 187 28.98 b.3.5.1,b.3.5.1 22625,22626 2evrA 246 29.71 b.34.11.3,d.3.1.16 132440,132441 2p3yA 491 30.77 1uz5A 402 30.83 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1fdrA 248 31.40 b.43.4.2,c.25.1.1 25653,31543 1h30A 422 31.88 b.29.1.4,b.29.1.4 76604,76605 3cewA 125 32.75 2e6iA 64 32.77 1wi5A 119 33.75 b.40.4.5 114661 1at0 145 35.30 2hufA 393 36.68 2bjqA 345 36.80 b.169.1.1,b.169.1.1 128626,128627 1e7uA 961 37.16 a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 2hc8A 113 37.38 1y8tA 324 37.59 b.36.1.4,b.47.1.1 122763,122764 3cb0A 173 37.98 1dz1A 70 38.20 b.34.13.2 37473 1nif 340 38.60 2e6rA 92 38.83 1sc3B 88 39.78 1xnzA 264 39.89 d.127.1.1 115673 1agjA 242 41.31 b.47.1.1 25827 1b8oA 284 41.88 c.56.2.1 33762 2a90A 240 43.13 1jdiA 231 43.58 c.74.1.1 66551 1ehaA 558 44.46 b.1.18.2,b.71.1.1,c.1.8.1 21859,27786,28773 1ngzB 220 44.57 b.1.1.1,b.1.1.2 80502,80503 1pyoB 105 44.70 1kmkA 406 45.75 c.67.1.3 68696 1bag 425 46.32 1nmsA 249 48.88 c.17.1.1 85879 1k0wA 231 49.83 c.74.1.1 77220 2b2yA 187 50.57 b.34.13.2,b.34.13.2 127754,127755 1ecxA 384 51.45 c.67.1.3 34431 2in0A 139 52.26 1nykA 165 52.36 b.33.1.1 86408 1i1wA 303 53.13 c.1.8.3 76732 2hbwA 235 53.26 1eerB 227 53.76 b.1.2.1,b.1.2.1 22011,22012 2jmzA 186 54.42 2cwpA 112 54.44 2d5mA 190 55.98 1at0A 145 56.81 b.86.1.1 28374 1ppjE 196 57.06 b.33.1.1,f.23.12.1 104260,104261 1jhfA 202 57.90 a.4.5.2,b.87.1.1 63057,63058 2rh7A 239 58.46 1z94A 147 58.95 d.129.3.5 124740 1fnoA 417 59.25 d.58.19.1,c.56.5.4 70145,75841 2nqrA 411 59.36 b.85.6.1,b.103.1.1,c.57.1.2 138490,138491,138492 1ep3B 262 59.87 b.43.4.2,c.25.1.3 25664,31554 2nzhA 113 60.13 1b9cA 236 60.25 d.22.1.1 38358 2h8zA 359 61.25 1rl2A 137 61.50 b.34.5.3,b.40.4.5 24610,25342 2yyoA 171 62.20 3bzcA 785 62.54 1c4rA 182 62.62 b.29.1.4 24229 1kk1A 410 62.76 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1rkiA 102 63.04 d.308.1.2 118776 1xu1R 42 63.24 g.24.1.2 116036 1b94A 244 63.28 c.52.1.2 33250 1uisA 231 63.53 d.22.1.1 99431 2dkhA 639 63.72 2dt5A 211 63.75 a.4.5.38,c.2.1.12 131708,131709 2hft 218 64.19 1uh4A 637 65.09 b.1.18.2,b.71.1.1,c.1.8.1 99391,99392,99393 1n13B 113 65.12 2ge7A 108 65.26 d.254.1.2 135049 2nujA 163 65.43 d.38.1.1 138608 1mc3A 296 65.47 c.68.1.6 78943 1oycA 400 65.52 c.1.4.1 28603 2r3uA 211 66.29 1ibcB 88 66.73 1qxyA 252 67.47 d.127.1.1 96565 2ivwA 113 68.22 2aaiB 262 68.29 b.42.2.1,b.42.2.1 25561,25562 1aj2A 282 69.16 c.1.21.1 29665 1lwjA 441 70.00 b.71.1.1,c.1.8.1 74303,74304 2oh5A 248 70.34 2aaa 484 70.65 1ep2B 261 70.85 b.43.4.2,c.25.1.3 25666,31556 1et7A 341 71.03 b.6.1.3,b.6.1.3 23070,23071 1v3fA 120 71.36 a.4.5.31 100289 2p0oA 372 71.49 1tplA 426 71.66 c.67.1.2 34387 1ypfA 336 71.70 2fmlA 273 74.26 a.4.5.68,d.113.1.6 133778,133779 1ehsA 48 74.37 g.2.1.1 43998 1khcA 147 74.46 b.34.9.2 68608 2fb2A 340 74.88 1ji1A 637 75.14 b.1.18.2,b.71.1.1,c.1.8.1 71666,71667,71668 1o6gA 710 76.29 b.69.7.1,c.69.1.4 81087,81088 1pfbA 55 77.24 b.34.13.2 94655 1g8jA 825 77.62 b.52.2.2,c.81.1.1 26924,35332 1ybdA 239 77.93 c.73.1.3 122884 1z41A 338 78.43 c.1.4.1 124421 2gjsA 176 78.90 c.37.1.8 135287 2abbA 364 79.11 c.1.4.1 126517 2iiaA 131 79.18 1aac 105 81.52 1b9eB 30 84.46 g.1.1.1 43885 5gcnA 166 84.81 d.108.1.1 40807 1bvzA 585 84.83 b.1.18.2,b.71.1.1,c.1.8.1 21856,27783,28770 2yxoA 267 85.63 2q2iA 116 86.41 1te0A 318 87.15 b.36.1.4,b.47.1.1 112400,112401 1pdqA 72 87.82 b.34.13.2 94590 3c5tA 122 88.72 1sotA 320 89.40 b.36.1.4,b.47.1.1 105852,105853 2h4aA 325 89.91