# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1g5vA	88	0.7870	b.34.9.1	60292
2qqrA	118	1.133		
1mhnA	59	1.164	b.34.9.1	84964
2gfaA	119	5.576	b.34.9.1,b.34.9.1	135089,135090
2eryA	172	6.080	c.37.1.8	132306
2j5aA	110	6.450		
1nmeB	92	8.314		
1ris	101	9.122		
1louA	101	9.325	d.58.14.1	39323
2f5kA	102	9.696	b.34.13.3	132995
1qtnB	95	9.709		
2dkoB	103	10.36		
2eqkA	85	12.44		
2hqxA	246	12.50	b.34.9.1	136675
2fhdA	153	17.36		
1kbvA	327	21.96	b.6.1.3,b.6.1.3	68395,68396
2psoA	237	23.20		
1wgsA	133	24.17	b.34.13.3	114622
2bkdN	134	25.09		
1vqoB	338	25.94	b.43.3.2	120363
1sc3B	88	26.69		
1pyoB	105	27.42		
1o6gA	710	28.15	b.69.7.1,c.69.1.4	81087,81088
1ehsA	48	28.45	g.2.1.1	43998
1ecxA	384	28.97	c.67.1.3	34431
1cqmA	101	29.73	d.58.14.1	39321
1n7oA	721	32.25	a.102.3.2,b.24.1.1,b.30.5.2	80259,80260,80261
1eg5A	384	32.37	c.67.1.3	34429
1zc1A	208	34.34		
2e6iA	64	37.35		
1v6zA	228	38.22	b.122.1.2,c.116.1.5	113551,113552
1vqoK	132	38.53	b.39.1.1	120372
1danT	80	38.99	b.1.2.1	21953
2egvA	229	39.18		
1nmsA	249	39.67	c.17.1.1	85879
2av9A	147	40.81	d.38.1.1	127365
1vqoA	240	41.11	b.34.5.3,b.40.4.5	120361,120362
1y9lA	115	41.17		
2r55A	231	41.89		
1lp3A	519	45.58	b.121.5.2	74169
1x1iA	752	46.62	a.102.3.2,b.24.1.1,b.30.5.2	121584,121585,121586
1x24A	180	49.43		
2yrvA	117	52.30		
1jdpA	441	55.27	c.93.1.1	62906
1kmkA	406	57.23	c.67.1.3	68696
1g8lA	411	60.05	b.85.6.1,b.103.1.1,c.57.1.2	60365,60366,60367
1vc3B	97	63.21		
2a90A	240	64.22		
1vmbA	140	65.37	d.58.14.1	113672
1uisA	231	65.64	d.22.1.1	99431
1ibcB	88	66.46		
1ul7A	102	67.43	d.129.6.1	99540
3cz8A	319	70.09		
1rovA	857	70.71	a.119.1.1,b.12.1.1	97674,97675
1kk1A	410	71.87	b.43.3.1,b.44.1.1,c.37.1.8	72634,72635,72636
1jj2B	337	71.88	b.43.3.2	63086
2opkA	112	72.47		
2e3nA	255	73.86		
2j01E	206	75.25		
2a5dA	175	75.81	c.37.1.8	126172
2a25A	193	76.27		
1b9cA	236	79.54	d.22.1.1	38358
3cewA	125	81.90		
1j0hA	588	84.13	b.1.18.2,b.71.1.1,c.1.8.1	77027,77028,77029
1griA	217	84.30	b.34.2.1,b.34.2.1,d.93.1.1	24531,24532,40473
1j9qA	341	85.11	b.6.1.3,b.6.1.3	62765,62766
1dz1A	70	85.44	b.34.13.2	37473
1vhyA	257	86.42	b.122.1.2,c.116.1.5	100714,100715
1khcA	147	87.21	b.34.9.2	68608