# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1g5vA	88	1.542	b.34.9.1	60292
1mhnA	59	2.266	b.34.9.1	84964
2qqrA	118	3.003		
2eryA	172	7.120	c.37.1.8	132306
1louA	101	10.53	d.58.14.1	39323
2gfaA	119	10.80	b.34.9.1,b.34.9.1	135089,135090
1ris	101	10.87		
2fhdA	153	14.02		
2j5aA	110	14.08		
1nmeB	92	15.74		
2dkoB	103	16.64		
1qtnB	95	17.68		
2f5kA	102	19.64	b.34.13.3	132995
2eqkA	85	20.83		
2hqxA	246	24.69	b.34.9.1	136675
2av9A	147	25.78	d.38.1.1	127365
1ehsA	48	28.11	g.2.1.1	43998
1cqmA	101	31.55	d.58.14.1	39321
1n7oA	721	35.43	a.102.3.2,b.24.1.1,b.30.5.2	80259,80260,80261
1zc1A	208	38.18		
1ecxA	384	39.19	c.67.1.3	34431
2r55A	231	39.62		
1kbvA	327	40.30	b.6.1.3,b.6.1.3	68395,68396
2e6iA	64	41.38		
1o6gA	710	41.46	b.69.7.1,c.69.1.4	81087,81088
1vqoB	338	41.51	b.43.3.2	120363
2egvA	229	43.52		
2psoA	237	45.75		
1lp3A	519	45.81	b.121.5.2	74169
1eg5A	384	46.41	c.67.1.3	34429
1wgsA	133	46.66	b.34.13.3	114622
3cz8A	319	46.93		
1sc3B	88	48.49		
1x1iA	752	48.91	a.102.3.2,b.24.1.1,b.30.5.2	121584,121585,121586
1kmkA	406	49.71	c.67.1.3	68696
1pyoB	105	51.99		
1vqoK	132	55.82	b.39.1.1	120372
1y9lA	115	58.19		
2q83A	346	60.80		
1vqoA	240	63.09	b.34.5.3,b.40.4.5	120361,120362
1v6zA	228	64.14	b.122.1.2,c.116.1.5	113551,113552
1x24A	180	66.59		
1uisA	231	67.27	d.22.1.1	99431
1xnzA	264	70.22	d.127.1.1	115673
1g8lA	411	71.04	b.85.6.1,b.103.1.1,c.57.1.2	60365,60366,60367
2a5dA	175	71.85	c.37.1.8	126172
1danT	80	72.52	b.1.2.1	21953
1b9cA	236	72.83	d.22.1.1	38358
1dz1A	70	73.55	b.34.13.2	37473
2yrvA	117	73.57		
2a90A	240	74.44		
1nmsA	249	80.46	c.17.1.1	85879
1ibcB	88	80.75		
1vmbA	140	82.43	d.58.14.1	113672
1ul7A	102	83.49	d.129.6.1	99540
3cewA	125	89.71		
1jdpA	441	89.76	c.93.1.1	62906