# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1g5vA	88	0.8835	b.34.9.1	60292
1mhnA	59	1.355	b.34.9.1	84964
2qqrA	118	1.855		
2gfaA	119	7.576	b.34.9.1,b.34.9.1	135089,135090
2hqxA	246	7.799	b.34.9.1	136675
2fhdA	153	9.701		
1louA	101	10.72	d.58.14.1	39323
2j5aA	110	10.86		
2eryA	172	11.31	c.37.1.8	132306
1ris	101	11.83		
1nmeB	92	14.25		
2f5kA	102	14.55	b.34.13.3	132995
1qtnB	95	16.43		
2eqkA	85	16.48		
2dkoB	103	16.56		
2av9A	147	19.98	d.38.1.1	127365
1vqoB	338	21.96	b.43.3.2	120363
1o6gA	710	26.49	b.69.7.1,c.69.1.4	81087,81088
2r55A	231	26.55		
1vqoK	132	30.04	b.39.1.1	120372
1jdpA	441	30.80	c.93.1.1	62906
1v6zA	228	30.85	b.122.1.2,c.116.1.5	113551,113552
1ecxA	384	34.26	c.67.1.3	34431
1zc1A	208	35.14		
1ehsA	48	35.68	g.2.1.1	43998
2e6iA	64	35.91		
1wgsA	133	36.12	b.34.13.3	114622
1vqoA	240	36.85	b.34.5.3,b.40.4.5	120361,120362
2psoA	237	37.45		
1lp3A	519	37.89	b.121.5.2	74169
1cqmA	101	37.93	d.58.14.1	39321
1eg5A	384	40.16	c.67.1.3	34429
1g8lA	411	40.60	b.85.6.1,b.103.1.1,c.57.1.2	60365,60366,60367
2egvA	229	40.86		
1kbvA	327	40.87	b.6.1.3,b.6.1.3	68395,68396
1kmkA	406	40.88	c.67.1.3	68696
1xnzA	264	42.24	d.127.1.1	115673
2yrvA	117	43.17		
1n7oA	721	49.49	a.102.3.2,b.24.1.1,b.30.5.2	80259,80260,80261
1danT	80	51.57	b.1.2.1	21953
1sc3B	88	53.57		
1pyoB	105	53.81		
1y9lA	115	56.61		
1x1iA	752	56.72	a.102.3.2,b.24.1.1,b.30.5.2	121584,121585,121586
2q83A	346	56.87		
1uisA	231	59.19	d.22.1.1	99431
3db2A	354	63.12		
2a90A	240	64.89		
2bkdN	134	65.58		
1b9cA	236	69.19	d.22.1.1	38358
1vhyA	257	71.75	b.122.1.2,c.116.1.5	100714,100715
3cz8A	319	76.07		
1yoaA	159	76.55	b.45.1.2	123775
1jj2B	337	76.97	b.43.3.2	63086
1nmsA	249	78.93	c.17.1.1	85879
1dz1A	70	80.60	b.34.13.2	37473
3cewA	125	80.61		
1kk1A	410	80.86	b.43.3.1,b.44.1.1,c.37.1.8	72634,72635,72636
2a25A	193	83.70		
1bngA	110	84.48	d.1.1.2	36184
1rovA	857	85.80	a.119.1.1,b.12.1.1	97674,97675
2p3yA	491	87.63		
2gw4B	162	89.88