# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1g5vA	88	1.739	b.34.9.1	60292
1mhnA	59	1.868	b.34.9.1	84964
2bkdN	134	5.131		
2eryA	172	8.601	c.37.1.8	132306
2gfaA	119	10.87	b.34.9.1,b.34.9.1	135089,135090
2f5kA	102	11.73	b.34.13.3	132995
2qqrA	118	15.03		
2a5dA	175	17.02	c.37.1.8	126172
1zd9A	188	20.00	c.37.1.8	124938
2b6hA	192	22.55	c.37.1.8	127994
2eqkA	85	23.49		
1nmeB	92	24.83		
1yoaA	159	26.21	b.45.1.2	123775
2nzhA	113	27.37		
2av9A	147	28.75	d.38.1.1	127365
1zj6A	187	31.45	c.37.1.8	125145
2q2iA	116	31.48		
2dkoB	103	31.62		
1danT	80	32.94	b.1.2.1	21953
1wgsA	133	39.44	b.34.13.3	114622
2cwpA	112	40.65		
1qtnB	95	42.16		
2fhdA	153	43.66		
2qckA	167	46.47		
1nmsA	249	50.28	c.17.1.1	85879
1z1zA	131	52.32	d.323.1.1	124366
1vqoB	338	57.47	b.43.3.2	120363
2fp3A	316	59.03		
1dz1A	70	59.92	b.34.13.2	37473
1b9cA	236	62.97	d.22.1.1	38358
1cp3A	277	66.82	c.17.1.1	30992
1giqA	413	68.46	d.166.1.1,d.166.1.1	76224,76225
1h6rA	236	76.63	d.22.1.1	65683
1xcbA	211	84.43	a.4.5.38,c.2.1.12	109552,109553
1x1iA	752	86.07	a.102.3.2,b.24.1.1,b.30.5.2	121584,121585,121586
2ou3A	161	86.41