# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1g5vA	88	0.8609	b.34.9.1	60292
1mhnA	59	1.269	b.34.9.1	84964
2qqrA	118	1.394		
2gfaA	119	4.205	b.34.9.1,b.34.9.1	135089,135090
2f5kA	102	7.015	b.34.13.3	132995
1o6gA	710	11.93	b.69.7.1,c.69.1.4	81087,81088
2eqkA	85	12.33		
2r55A	231	12.76		
1ris	101	13.35		
1nmeB	92	13.95		
2dkoB	103	15.12		
2av9A	147	15.37	d.38.1.1	127365
2eryA	172	16.67	c.37.1.8	132306
2fhdA	153	17.15		
1louA	101	18.82	d.58.14.1	39323
1qtnB	95	19.44		
2j5aA	110	19.50		
2hqxA	246	22.72	b.34.9.1	136675
2psoA	237	23.44		
2bkdN	134	24.93		
1zc1A	208	25.14		
1g8lA	411	25.68	b.85.6.1,b.103.1.1,c.57.1.2	60365,60366,60367
1wgsA	133	26.23	b.34.13.3	114622
1kbvA	327	26.28	b.6.1.3,b.6.1.3	68395,68396
1jdpA	441	28.98	c.93.1.1	62906
1vqoK	132	30.36	b.39.1.1	120372
2e6iA	64	30.73		
1ecxA	384	32.19	c.67.1.3	34431
1ehsA	48	33.71	g.2.1.1	43998
1lp3A	519	33.96	b.121.5.2	74169
1v6zA	228	38.89	b.122.1.2,c.116.1.5	113551,113552
1y9lA	115	39.03		
1j6uA	469	40.28	c.5.1.1,c.59.1.1,c.72.2.1	77094,77095,77096
2btlA	134	40.60	b.148.1.1	129154
1vqoB	338	40.87	b.43.3.2	120363
1x24A	180	42.53		
1bngA	110	44.42	d.1.1.2	36184
1danT	80	47.10	b.1.2.1	21953
2q83A	346	50.60		
2oh5A	248	52.36		
1jfxA	217	55.97	c.1.8.8	62943
1eg5A	384	56.63	c.67.1.3	34429
2j01E	206	58.68		
1n7oA	721	59.78	a.102.3.2,b.24.1.1,b.30.5.2	80259,80260,80261
1kmkA	406	59.91	c.67.1.3	68696
1uisA	231	60.70	d.22.1.1	99431
1fsiA	189	66.42	d.61.1.1	39536
1sc3B	88	66.72		
2opkA	112	68.13		
1m1lA	236	68.52	d.260.1.1	91166
1nmsA	249	70.53	c.17.1.1	85879
1sk4A	163	70.95	d.118.1.1	105664
1cqmA	101	71.04	d.58.14.1	39321
1pyoB	105	71.80		
1j9qA	341	72.69	b.6.1.3,b.6.1.3	62765,62766
2hufA	393	73.45		
1v3fA	120	75.15	a.4.5.31	100289
1kk1A	410	77.55	b.43.3.1,b.44.1.1,c.37.1.8	72634,72635,72636
1j0hA	588	78.17	b.1.18.2,b.71.1.1,c.1.8.1	77027,77028,77029
2yrvA	117	78.96		
2egvA	229	81.78		
1m6nA	802	83.87	a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19	78697,78698,78699,78700
2dt5A	211	84.64	a.4.5.38,c.2.1.12	131708,131709
1q3lA	69	84.66	b.34.13.2	111652
1b2zA	110	84.74	d.1.1.2	36216
3db2A	354	85.01		
2a90A	240	87.52		
1as6A	343	87.81	b.6.1.3,b.6.1.3	23090,23091
3cewA	125	87.95		
1v5sA	126	88.21	d.129.6.1	108384
2dkhA	639	88.43		
1yoaA	159	89.96	b.45.1.2	123775