# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1cxlA 686 1.149 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21829,22498,27736,28723 1htyA 1015 2.532 a.8.3.1,b.30.5.6,c.6.2.1 83064,83065,83066 1g5vA 88 3.107 b.34.9.1 60292 1vf8A 377 3.739 c.1.8.5,d.26.3.1 120029,120030 1yo8A 634 6.097 2hqxA 246 8.199 b.34.9.1 136675 2qqrA 118 8.379 1mhnA 59 8.582 b.34.9.1 84964 1hkkA 364 10.41 c.1.8.5,d.26.3.1 90634,90635 2fhdA 153 11.73 1ms9A 648 11.84 b.29.1.15,b.68.1.1 85088,85089 2gfaA 119 12.24 b.34.9.1,b.34.9.1 135089,135090 1x8qA 184 12.50 b.60.1.1 114966 1o6gA 710 17.08 b.69.7.1,c.69.1.4 81087,81088 1ky9A 448 17.88 b.36.1.4,b.47.1.1 73198,73199 2a6vA 226 20.52 b.29.1.13 126312 2a6hC 1119 20.97 e.29.1.1 126264 1nif 340 23.74 1e6pA 499 25.61 b.72.2.1,c.1.8.5,d.26.3.1 59314,59315,59316 3cz8A 319 26.33 1oi1A 221 27.79 b.34.9.3,b.34.9.3 87037,87038 1i0dA 332 28.38 c.1.9.3 61487 1dzlA 505 30.03 b.121.6.1 23586 2f5kA 102 30.24 b.34.13.3 132995 1wb0A 445 30.81 c.1.8.5,d.26.3.1 120825,120826 1pc3A 350 30.88 c.94.1.1 104102 2q83A 346 33.64 1suuA 312 33.94 b.68.10.1 99006 1lg2A 365 35.73 c.1.8.5,d.26.3.1 77950,77951 1h09A 338 36.62 b.109.1.1,c.1.8.8 83420,83421 1ynfA 458 36.64 d.126.1.7 123723 1ji2A 585 36.80 b.1.18.2,b.71.1.1,c.1.8.1 71672,71673,71674 1qtnB 95 38.20 1ed8A 449 38.34 c.76.1.1 34988 1crkA 380 38.88 a.83.1.1,d.128.1.2 18458,41193 2eqkA 85 39.59 1f1xA 322 39.71 d.32.1.3,d.32.1.3 83208,83209 1pscA 365 40.12 c.1.9.3 29058 2qmqA 286 40.17 1nmsA 249 41.51 c.17.1.1 85879 1ris 101 41.96 2gw4B 162 42.64 2vovA 336 43.87 1pg4A 652 44.04 e.23.1.1 88067 2cf5A 357 44.45 1fs5A 266 44.99 c.124.1.1 65044 1qwnA 1045 45.49 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 2z3yA 662 45.68 2as0A 396 46.70 b.122.1.9,c.66.1.51 127227,127228 2nsmA 439 49.35 1hkbA 917 51.87 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33479,33480,33481,33482 1y8tA 324 51.99 b.36.1.4,b.47.1.1 122763,122764 1vc3B 97 52.83 1qjvA 342 53.40 b.80.1.5 28035 1louA 101 54.68 d.58.14.1 39323 1vns 609 55.94 1c8gA 548 58.34 b.121.5.2 23380 1d8cA 723 61.93 c.1.13.1 29325 1kbvA 327 64.83 b.6.1.3,b.6.1.3 68395,68396 2dkhA 639 65.51 1cp3A 277 66.15 c.17.1.1 30992 1q1uA 144 68.22 b.42.1.1 95608 3c86A 328 68.31 2sliA 679 68.98 b.29.1.9,b.68.1.1 24274,27611 2reeA 224 69.04 2gl6A 392 69.23 1a8d 452 69.36 1wl7A 312 69.59 b.67.2.1 120996 2idbA 505 70.31 b.45.1.3,d.333.1.1 137270,137271 1s96A 219 70.47 c.37.1.1 98740 1nmeB 92 70.62 1kwmA 402 72.21 c.56.5.1,d.58.3.1 73079,73080 1igtD 444 72.70 b.1.1.1,b.1.1.2,b.1.1.2,b.1.1.2 19767,20871,20872,20873 1jhnA 424 73.35 b.104.1.1,b.29.1.12 66722,70060 2psoA 237 73.45 2tgiA 112 74.79 g.17.1.2 44777 1kdgA 546 75.05 c.3.1.2,d.16.1.1 77337,77338 2oixA 186 75.11 1t90A 486 79.94 1ot1A 686 82.54 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 87392,87393,87394,87395 2eryA 172 85.13 c.37.1.8 132306 1zc1A 208 85.52 1eexB 224 86.44 c.51.3.1 33213 1qxoA 388 87.37 d.258.1.1 96539 2uxyA 341 88.03 1d2kA 392 89.29 c.1.8.5,d.26.3.1 29008,38442