# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1g5vA	88	0.5709	b.34.9.1	60292
2qqrA	118	0.7504		
1mhnA	59	0.7902	b.34.9.1	84964
2gfaA	119	1.562	b.34.9.1,b.34.9.1	135089,135090
2f5kA	102	4.321	b.34.13.3	132995
2fhdA	153	7.690		
2hqxA	246	8.133	b.34.9.1	136675
2eryA	172	8.738	c.37.1.8	132306
2eqkA	85	9.490		
1zc1A	208	11.27		
2av9A	147	13.50	d.38.1.1	127365
1ris	101	13.62		
2e6iA	64	14.04		
1v6zA	228	16.03	b.122.1.2,c.116.1.5	113551,113552
1wgsA	133	16.39	b.34.13.3	114622
1louA	101	17.45	d.58.14.1	39323
1nmeB	92	19.81		
2btlA	134	19.94	b.148.1.1	129154
1o6gA	710	20.44	b.69.7.1,c.69.1.4	81087,81088
2j5aA	110	24.41		
1vqoK	132	25.10	b.39.1.1	120372
2bkdN	134	25.16		
2dkoB	103	25.55		
1vhyA	257	26.12	b.122.1.2,c.116.1.5	100714,100715
1kbvA	327	27.44	b.6.1.3,b.6.1.3	68395,68396
1j6uA	469	28.84	c.5.1.1,c.59.1.1,c.72.2.1	77094,77095,77096
1lp3A	519	30.83	b.121.5.2	74169
1danT	80	32.14	b.1.2.1	21953
1x24A	180	32.92		
2egvA	229	33.63		
1ecxA	384	34.49	c.67.1.3	34431
2q83A	346	35.81		
2psoA	237	36.07		
1qtnB	95	37.32		
1jfxA	217	38.72	c.1.8.8	62943
1v5sA	126	38.88	d.129.6.1	108384
1bngA	110	39.25	d.1.1.2	36184
1yoaA	159	39.76	b.45.1.2	123775
1ehsA	48	41.57	g.2.1.1	43998
1xnzA	264	45.89	d.127.1.1	115673
1sk4A	163	46.00	d.118.1.1	105664
1g8lA	411	47.05	b.85.6.1,b.103.1.1,c.57.1.2	60365,60366,60367
1fsiA	189	47.72	d.61.1.1	39536
1kmkA	406	49.11	c.67.1.3	68696
2qckA	167	49.79		
2opkA	112	51.86		
2ofzA	138	53.45		
1jdpA	441	54.15	c.93.1.1	62906
2hufA	393	54.67		
1m1lA	236	55.07	d.260.1.1	91166
1eg5A	384	55.34	c.67.1.3	34429
1vqoB	338	59.27	b.43.3.2	120363
1rkiA	102	59.72	d.308.1.2	118776
3cewA	125	59.82		
1ul7A	102	60.10	d.129.6.1	99540
1e7uA	961	61.27	a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4	19147,23182,37630,41710
1v3fA	120	62.09	a.4.5.31	100289
2dt5A	211	63.42	a.4.5.38,c.2.1.12	131708,131709
1xcbA	211	64.58	a.4.5.38,c.2.1.12	109552,109553
1s96A	219	64.68	c.37.1.1	98740
1cqmA	101	65.19	d.58.14.1	39321
1uisA	231	65.71	d.22.1.1	99431
2hazA	105	66.92	b.1.2.1	136303
1q3lA	69	68.77	b.34.13.2	111652
1n7oA	721	72.32	a.102.3.2,b.24.1.1,b.30.5.2	80259,80260,80261
1griA	217	73.37	b.34.2.1,b.34.2.1,d.93.1.1	24531,24532,40473
1z85A	234	73.50		
2r55A	231	74.85		
1y9lA	115	75.85		
1b2zA	110	75.91	d.1.1.2	36216
2j01E	206	77.87		
1o0xA	262	78.40	d.127.1.1	80755
1dz1A	70	82.05	b.34.13.2	37473
3cnxA	170	83.69		
2yrvA	117	84.50		
3cz8A	319	85.39		
2a5dA	175	85.73	c.37.1.8	126172
2gecA	139	88.39	b.148.1.1	135059
1zd9A	188	89.93	c.37.1.8	124938