# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1g5vA	88	1.466	b.34.9.1	60292
1mhnA	59	2.689	b.34.9.1	84964
2qqrA	118	3.075		
2gfaA	119	9.792	b.34.9.1,b.34.9.1	135089,135090
2eqkA	85	12.06		
2hqxA	246	14.54	b.34.9.1	136675
2eryA	172	15.37	c.37.1.8	132306
2fhdA	153	15.43		
1ris	101	17.85		
1louA	101	20.06	d.58.14.1	39323
1kbvA	327	21.38	b.6.1.3,b.6.1.3	68395,68396
2f5kA	102	21.82	b.34.13.3	132995
1zc1A	208	24.15		
2av9A	147	24.79	d.38.1.1	127365
1nmeB	92	29.51		
2dkoB	103	31.04		
1o6gA	710	35.88	b.69.7.1,c.69.1.4	81087,81088
2j5aA	110	39.75		
1ehsA	48	39.98	g.2.1.1	43998
1qtnB	95	41.55		
3cewA	125	43.03		
1vqoK	132	45.00	b.39.1.1	120372
1g8lA	411	45.25	b.85.6.1,b.103.1.1,c.57.1.2	60365,60366,60367
1jdpA	441	46.49	c.93.1.1	62906
2e6iA	64	46.92		
2r55A	231	47.23		
1cqmA	101	47.54	d.58.14.1	39321
1danT	80	48.02	b.1.2.1	21953
1lp3A	519	49.11	b.121.5.2	74169
1xcbA	211	50.49	a.4.5.38,c.2.1.12	109552,109553
1kmkA	406	51.03	c.67.1.3	68696
1vqoA	240	52.62	b.34.5.3,b.40.4.5	120361,120362
1ecxA	384	53.07	c.67.1.3	34431
1xnzA	264	55.39	d.127.1.1	115673
2gw4B	162	56.07		
1m1lA	236	57.83	d.260.1.1	91166
1j9qA	341	60.12	b.6.1.3,b.6.1.3	62765,62766
3db2A	354	60.68		
2yrvA	117	63.59		
1uisA	231	67.68	d.22.1.1	99431
1vqoB	338	69.01	b.43.3.2	120363
1wgsA	133	70.17	b.34.13.3	114622
1nif	340	70.83		
2dt5A	211	72.46	a.4.5.38,c.2.1.12	131708,131709
1j0hA	588	76.41	b.1.18.2,b.71.1.1,c.1.8.1	77027,77028,77029
2q83A	346	76.70		
1j6uA	469	76.98	c.5.1.1,c.59.1.1,c.72.2.1	77094,77095,77096
2egvA	229	78.28		
2psoA	237	79.44		
1v6zA	228	80.74	b.122.1.2,c.116.1.5	113551,113552
2bkdN	134	81.80		
2a90A	240	82.45		
1eg5A	384	82.79	c.67.1.3	34429
1x24A	180	87.68