# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1g5vA	88	1.295	b.34.9.1	60292
1mhnA	59	1.331	b.34.9.1	84964
2qqrA	118	1.486		
2gfaA	119	3.382	b.34.9.1,b.34.9.1	135089,135090
2j5aA	110	6.030		
1ris	101	8.854		
2eryA	172	10.06	c.37.1.8	132306
1nmeB	92	10.49		
2dkoB	103	12.29		
1wgsA	133	12.35	b.34.13.3	114622
1louA	101	12.45	d.58.14.1	39323
1qtnB	95	14.23		
2f5kA	102	15.59	b.34.13.3	132995
2eqkA	85	17.38		
1zc1A	208	17.77		
2av9A	147	18.55	d.38.1.1	127365
2psoA	237	18.59		
1ehsA	48	19.91	g.2.1.1	43998
2e6iA	64	22.42		
2hqxA	246	22.58	b.34.9.1	136675
2fhdA	153	24.39		
1kbvA	327	29.15	b.6.1.3,b.6.1.3	68395,68396
1x1iA	752	30.59	a.102.3.2,b.24.1.1,b.30.5.2	121584,121585,121586
1n7oA	721	31.93	a.102.3.2,b.24.1.1,b.30.5.2	80259,80260,80261
1jdpA	441	33.13	c.93.1.1	62906
1j6uA	469	35.20	c.5.1.1,c.59.1.1,c.72.2.1	77094,77095,77096
2bkdN	134	35.53		
1pyoB	105	35.85		
2p0pA	126	36.37		
2opkA	112	37.25		
1j0hA	588	37.63	b.1.18.2,b.71.1.1,c.1.8.1	77027,77028,77029
1vqoA	240	38.21	b.34.5.3,b.40.4.5	120361,120362
1sc3B	88	38.76		
1h3gA	601	39.00	b.1.18.2,b.71.1.1,c.1.8.1	90594,90595,90596
1vqoK	132	39.42	b.39.1.1	120372
1cqmA	101	39.47	d.58.14.1	39321
1nmsA	249	43.02	c.17.1.1	85879
2yrvA	117	43.23		
1danT	80	45.62	b.1.2.1	21953
1x24A	180	47.66		
1sk4A	163	48.77	d.118.1.1	105664
1ecxA	384	51.12	c.67.1.3	34431
1vqoB	338	51.53	b.43.3.2	120363
1m1lA	236	52.45	d.260.1.1	91166
1g8lA	411	52.80	b.85.6.1,b.103.1.1,c.57.1.2	60365,60366,60367
1y9lA	115	55.22		
1ibcB	88	58.61		
1j9qA	341	61.02	b.6.1.3,b.6.1.3	62765,62766
2egvA	229	61.36		
3cewA	125	61.47		
2qckA	167	63.38		
2a90A	240	63.47		
1jg1A	235	64.45	c.66.1.7	66661
1v6zA	228	65.03	b.122.1.2,c.116.1.5	113551,113552
1yoaA	159	65.26	b.45.1.2	123775
1vc3B	97	65.83		
2q83A	346	69.75		
1g8kA	825	71.35	b.52.2.2,c.81.1.1	26920,35328
1xnzA	264	72.05	d.127.1.1	115673
1lp3A	519	72.39	b.121.5.2	74169
1vmbA	140	72.80	d.58.14.1	113672
1v5sA	126	75.57	d.129.6.1	108384
1uisA	231	77.40	d.22.1.1	99431
1griA	217	79.01	b.34.2.1,b.34.2.1,d.93.1.1	24531,24532,40473
1ul7A	102	81.09	d.129.6.1	99540
2r55A	231	81.12		
1r7aA	504	82.84	b.71.1.1,c.1.8.1	97192,97193
1eg5A	384	84.27	c.67.1.3	34429
1c5cH	215	88.96	b.1.1.1,b.1.1.2	20475,21439