# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1g5vA	88	0.6849	b.34.9.1	60292
1mhnA	59	1.095	b.34.9.1	84964
2qqrA	118	2.294		
2j5aA	110	7.637		
2gfaA	119	7.835	b.34.9.1,b.34.9.1	135089,135090
2eqkA	85	8.809		
2f5kA	102	9.686	b.34.13.3	132995
2dkoB	103	10.70		
1nmeB	92	11.81		
1zc1A	208	12.63		
1ris	101	12.66		
1qtnB	95	14.06		
1louA	101	15.11	d.58.14.1	39323
2av9A	147	15.41	d.38.1.1	127365
2eryA	172	17.42	c.37.1.8	132306
1vqoB	338	21.72	b.43.3.2	120363
1vqoK	132	22.25	b.39.1.1	120372
2hqxA	246	22.26	b.34.9.1	136675
1ehsA	48	26.68	g.2.1.1	43998
2psoA	237	31.50		
1g8lA	411	33.28	b.85.6.1,b.103.1.1,c.57.1.2	60365,60366,60367
1wgsA	133	33.43	b.34.13.3	114622
2fhdA	153	33.64		
1danT	80	34.71	b.1.2.1	21953
1ecxA	384	35.56	c.67.1.3	34431
1kbvA	327	36.73	b.6.1.3,b.6.1.3	68395,68396
2r55A	231	37.92		
1j9qA	341	38.34	b.6.1.3,b.6.1.3	62765,62766
1pyoB	105	40.17		
1cqmA	101	41.42	d.58.14.1	39321
1xnzA	264	42.28	d.127.1.1	115673
2q83A	346	44.85		
1sc3B	88	44.97		
1nmsA	249	46.05	c.17.1.1	85879
3cewA	125	47.46		
1j6uA	469	48.14	c.5.1.1,c.59.1.1,c.72.2.1	77094,77095,77096
1vqoA	240	51.29	b.34.5.3,b.40.4.5	120361,120362
1jdpA	441	52.53	c.93.1.1	62906
2j01E	206	55.30		
2a90A	240	55.50		
2yrvA	117	57.13		
1eg5A	384	59.69	c.67.1.3	34429
2p0pA	126	60.72		
1n7oA	721	61.50	a.102.3.2,b.24.1.1,b.30.5.2	80259,80260,80261
1y9lA	115	62.21		
2e6iA	64	63.40		
1c5cH	215	63.71	b.1.1.1,b.1.1.2	20475,21439
1x1iA	752	65.25	a.102.3.2,b.24.1.1,b.30.5.2	121584,121585,121586
1j0hA	588	65.88	b.1.18.2,b.71.1.1,c.1.8.1	77027,77028,77029
2opkA	112	66.22		
1h30A	422	67.38	b.29.1.4,b.29.1.4	76604,76605
1nif	340	68.21		
1vmbA	140	68.41	d.58.14.1	113672
1z1zA	131	68.63	d.323.1.1	124366
2qckA	167	70.96		
1griA	217	71.94	b.34.2.1,b.34.2.1,d.93.1.1	24531,24532,40473
1o0xA	262	75.73	d.127.1.1	80755
2hy7A	406	76.37		
1yoaA	159	77.22	b.45.1.2	123775
1ibcB	88	78.17		
1kmkA	406	78.69	c.67.1.3	68696
1x24A	180	79.02		
2bkdN	134	79.11		
1rkiA	102	79.80	d.308.1.2	118776
1o6gA	710	81.00	b.69.7.1,c.69.1.4	81087,81088
1jj2B	337	81.96	b.43.3.2	63086
2gw4B	162	83.46		
1v6zA	228	84.21	b.122.1.2,c.116.1.5	113551,113552
1vc3B	97	86.45		
1wi5A	119	86.68	b.40.4.5	114661
1fsiA	189	87.43	d.61.1.1	39536
2btlA	134	89.37	b.148.1.1	129154
1lp3A	519	89.60	b.121.5.2	74169