# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2eryA	172	2.340	c.37.1.8	132306
1mhnA	59	4.253	b.34.9.1	84964
2a5dA	175	6.072	c.37.1.8	126172
1g5vA	88	7.382	b.34.9.1	60292
2bkdN	134	8.656		
1zd9A	188	10.39	c.37.1.8	124938
2b6hA	192	12.74	c.37.1.8	127994
1danT	80	15.19	b.1.2.1	21953
1bb9	115	16.32		
2oj5A	165	20.71		
1nmsA	249	21.75	c.17.1.1	85879
2qqrA	118	24.75		
1zj6A	187	25.20	c.37.1.8	125145
2hqxA	246	31.67	b.34.9.1	136675
2fhdA	153	36.99		
2nujA	163	37.08	d.38.1.1	138608
1ybdA	239	40.23	c.73.1.3	122884
2eqkA	85	44.62		
1cp3A	277	47.55	c.17.1.1	30992
1khcA	147	47.73	b.34.9.2	68608
1nmeB	92	47.83		
1louA	101	49.91	d.58.14.1	39323
1j4aA	333	51.53	c.2.1.4,c.23.12.1	71502,71503
1ris	101	57.36		
1o6gA	710	57.41	b.69.7.1,c.69.1.4	81087,81088
1vqoB	338	59.74	b.43.3.2	120363
2qvjA	421	60.06		
2nr3A	183	62.40		
2gicA	422	63.78	a.260.1.1	135227
2r55A	231	64.03		
1lybB	241	65.88		
2j5aA	110	66.86		
2gfaA	119	67.10	b.34.9.1,b.34.9.1	135089,135090
2fn4A	181	69.57	c.37.1.8	133806
1eerB	227	69.88	b.1.2.1,b.1.2.1	22011,22012
2ar9A	278	75.31		
2f5kA	102	75.59	b.34.13.3	132995
1mkfA	382	75.65	b.116.1.1	79232
1yd9A	193	76.02	c.50.1.2	122976
2v5jA	287	76.80		
2q2iA	116	79.90		
1k2fA	190	80.69	b.8.1.2	68054
2yv9A	291	82.21		
2dkoB	103	82.51		
1f6bA	198	82.57	c.37.1.8	64986
1dz1A	70	84.49	b.34.13.2	37473
1ysjA	404	84.72	c.56.5.4,d.58.19.1	123975,123976
1i8dA	213	85.87	b.43.4.3,b.43.4.3	61953,61954