# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1g5vA	88	1.382	b.34.9.1	60292
1mhnA	59	2.063	b.34.9.1	84964
2j5aA	110	3.778		
2eryA	172	3.797	c.37.1.8	132306
1ris	101	5.030		
2f5kA	102	5.790	b.34.13.3	132995
1louA	101	6.510	d.58.14.1	39323
2a5dA	175	6.630	c.37.1.8	126172
2bkdN	134	6.963		
2qqrA	118	8.177		
1zd9A	188	8.198	c.37.1.8	124938
2b6hA	192	9.578	c.37.1.8	127994
2eqkA	85	11.13		
1cqmA	101	19.73	d.58.14.1	39321
1bb9	115	22.24		
1r61A	207	22.67	c.8.8.1	97138
1zj6A	187	27.39	c.37.1.8	125145
1nmsA	249	28.19	c.17.1.1	85879
1wgsA	133	29.33	b.34.13.3	114622
2fhdA	153	30.84		
2gfaA	119	33.64	b.34.9.1,b.34.9.1	135089,135090
1ctqA	166	34.96	c.37.1.8	31965
2gjsA	176	35.44	c.37.1.8	135287
1vmbA	140	36.42	d.58.14.1	113672
1danT	80	38.84	b.1.2.1	21953
1fvpA	231	42.14	c.1.16.2	29556
1rzhL	281	43.33	f.26.1.1	98164
1dxrL	273	46.00	f.26.1.1	43431
1x3sA	195	47.78	c.37.1.8	121670
6prcL	273	50.67	f.26.1.1	43434
1cp3A	277	56.56	c.17.1.1	30992
1ji1A	637	57.15	b.1.18.2,b.71.1.1,c.1.8.1	71666,71667,71668
1k2fA	190	58.51	b.8.1.2	68054
2i5nL	273	59.92	f.26.1.1	137066
2fn4A	181	60.30	c.37.1.8	133806
1rzhM	307	61.82	f.26.1.1	98165
1f6bA	198	62.48	c.37.1.8	64986
1vqoB	338	66.73	b.43.3.2	120363
1i8dA	213	66.78	b.43.4.3,b.43.4.3	61953,61954
1eysL	280	72.11	f.26.1.1	43515
1ybdA	239	72.42	c.73.1.3	122884
2iwaA	266	72.91		
1dz1A	70	75.85	b.34.13.2	37473
2nujA	163	77.76	d.38.1.1	138608
1eerB	227	81.53	b.1.2.1,b.1.2.1	22011,22012
1o3yA	166	83.52	c.37.1.8	86618
1eujA	166	84.43	b.40.4.4	25316
1k5wA	152	87.98	b.7.1.2	68212
1wlyA	333	89.17