# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2bkdN 134 0.3989 2g3rA 123 1.245 b.34.9.1,b.34.9.1 134570,134571 2qqrA 118 1.743 2ckkA 127 2.444 2fhdA 153 4.601 2f5kA 102 5.872 b.34.13.3 132995 1kzlA 208 6.459 b.43.4.3,b.43.4.3 77635,77636 1rl2A 137 8.878 b.34.5.3,b.40.4.5 24610,25342 1xniA 118 10.07 b.34.9.1,b.34.9.1 115582,115583 2gfaA 119 10.11 b.34.9.1,b.34.9.1 135089,135090 2ii1A 301 11.83 1y14B 171 12.69 b.40.4.5,d.230.1.1 116323,116324 1go3E 187 16.48 b.40.4.5,d.230.1.1 83054,83055 2cwpA 112 16.68 1wzoA 246 16.96 1khcA 147 18.80 b.34.9.2 68608 1i8dA 213 19.78 b.43.4.3,b.43.4.3 61953,61954 2oqkA 117 21.54 1kkhA 317 21.71 d.14.1.5,d.58.26.3 72645,72646 2rcfA 91 22.12 2nptA 106 25.97 d.15.2.2 138448 3ceyA 474 26.99 1eujA 166 27.96 b.40.4.4 25316 2b6hA 192 30.69 c.37.1.8 127994 1bdo 80 31.82 1fl0A 171 32.25 b.40.4.4 25315 1dj7B 75 32.59 b.34.4.3 24598 2cwzA 141 33.72 d.38.1.7 130961 1at0 145 33.99 1vie 62 35.16 1i0rA 169 35.47 b.45.1.2 61489 2hd3A 103 37.72 1mr3F 181 38.02 c.37.1.8 79422 2a19A 175 38.51 1h9mA 145 38.68 b.40.6.2,b.40.6.2 60833,60834 2qlcA 126 40.06 1vif 62 40.24 2ivyA 101 40.33 1zd9A 188 40.66 c.37.1.8 124938 2gqvA 62 40.78 b.34.4.1 135515 2pth 193 41.55 2c0cA 362 43.53 1zj6A 187 44.79 c.37.1.8 125145 1d0nA 729 47.41 d.109.1.1,d.109.1.1,d.109.1.1,d.109.1.1,d.109.1.1,d.109.1.1 40834,40835,40836,40837,40838,40839 1y1oA 203 48.59 c.52.1.28 116345 1yoaA 159 48.63 b.45.1.2 123775 2ff7A 247 49.00 c.37.1.12 133377 1am2 199 49.30 1wi0A 113 49.34 d.15.2.2 114657 1g8kA 825 49.90 b.52.2.2,c.81.1.1 26920,35328 1jt8A 102 50.27 b.40.4.5 63279 1bb9 115 50.58 2e8gA 241 50.68 1wfyA 104 50.78 d.15.1.5 114597 2ixeA 271 50.86 2qkiC 343 52.59 1cskA 71 52.70 b.34.2.1 24513 1uwvA 433 53.18 b.40.4.12,c.66.1.40 100128,100129 2hqxA 246 56.36 b.34.9.1 136675 2fcoA 200 58.08 1q46A 175 58.80 a.60.14.1,b.40.4.5 111594,111595 1xyiA 66 59.22 2z1cA 75 59.27 1pl8A 356 60.87 b.35.1.2,c.2.1.1 94878,94879 1ky9A 448 64.06 b.36.1.4,b.47.1.1 73198,73199 2p0kA 212 65.60 1zp7A 206 66.80 1rznA 205 67.29 c.52.1.28 111981 1hjrA 158 67.41 c.55.3.6 33727 1sawA 225 67.59 d.177.1.1 112050 2pu9B 74 69.44 1widA 130 69.60 b.142.1.2 114667 2rh2A 62 72.17 2vcyA 344 72.26 2dtjA 178 72.40 2vacA 134 72.86 1cm7A 363 74.17 c.77.1.1 35063 2pthA 193 76.09 c.56.3.1 33793 1h9jA 145 77.29 b.40.6.2,b.40.6.2 60829,60830 1wj6A 101 77.86 d.15.2.2 114693 1k47A 337 78.23 d.14.1.5,d.58.26.4 72040,72041 1at0A 145 79.62 b.86.1.1 28374 1d7qA 143 82.06 b.40.4.5 25331 1am2A 199 83.05 b.86.1.2 28381 1nkqA 259 84.64 d.177.1.1 103862 1wlyA 333 84.99 1vqoK 132 87.42 b.39.1.1 120372 2qf4A 172 88.73 1yzgA 179 89.63 c.37.1.8 124276