Best Alignments for TR429

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2bkdN	8.3675e+00	2bkdN/TR429-2bkdN-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2qqrA	9.1990e+00	2qqrA/TR429-2qqrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2hqxA	1.3703e+01	2hqxA/TR429-2hqxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.9.1
1em2A	2.7347e+01	1em2A/TR429-1em2A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.129.3.2
1z1zA	2.9248e+01	1z1zA/TR429-1z1zA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.323.1.1
1s96A	2.9762e+01	1s96A/TR429-1s96A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.1
2dkoB	3.5481e+01	2dkoB/TR429-2dkoB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2asuB	3.8080e+01	2asuB/TR429-2asuB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2j01E	3.9901e+01	2j01E/TR429-2j01E-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1zxfA	4.0405e+01	1zxfA/TR429-1zxfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.129.3.5
1vqoB	4.1293e+01	1vqoB/TR429-1vqoB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.43.3.2
1v0aA	4.6087e+01	1v0aA/TR429-1v0aA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.18.1.30
1pfbA	4.6938e+01	1pfbA/TR429-1pfbA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.13.2
1sc3B	5.0826e+01	1sc3B/TR429-1sc3B-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1gvhA	5.3517e+01	1gvhA/TR429-1gvhA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.1.1.2 b.43.4.2 c.25.1.5
1g2qA	5.3922e+01	1g2qA/TR429-1g2qA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.61.1.1
1gx5A	5.4677e+01	1gx5A/TR429-1gx5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	e.8.1.4
1dk8A	5.5447e+01	1dk8A/TR429-1dk8A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.91.1.1
1q3lA	5.5976e+01	1q3lA/TR429-1q3lA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.13.2
2j5aA	5.8811e+01	2j5aA/TR429-2j5aA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001