# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qqrA 118 2.445 2hqxA 246 4.388 b.34.9.1 136675 2bkdN 134 6.456 2asuB 234 10.40 1em2A 229 10.47 d.129.3.2 41321 1gvhA 396 11.28 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1v0aA 178 13.04 b.18.1.30 119815 1krhA 338 13.15 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 1gx5A 536 19.00 e.8.1.4 70682 1pfbA 55 19.86 b.34.13.2 94655 1g2qA 187 20.23 c.61.1.1 65117 1zxfA 155 20.93 d.129.3.5 125771 1sc3A 178 21.62 c.17.1.1 105416 2dkoB 103 21.79 2rkqA 169 23.29 1s96A 219 25.31 c.37.1.1 98740 2j5aA 110 26.68 1q3lA 69 27.99 b.34.13.2 111652 1ohtA 215 28.64 d.118.1.1 87036 1kjwA 295 29.60 b.34.2.1,c.37.1.1 68643,68644 2j01E 206 31.17 2yrvA 117 33.46 1v2xA 194 35.38 c.116.1.1 100274 1oe1A 336 36.99 b.6.1.3,b.6.1.3 86891,86892 1vqoB 338 37.21 b.43.3.2 120363 1cfbA 205 37.29 b.1.2.1,b.1.2.1 21991,21992 2gfaA 119 38.23 b.34.9.1,b.34.9.1 135089,135090 1xu1R 42 40.80 g.24.1.2 116036 1sc3B 88 41.62 1ju2A 536 41.74 c.3.1.2,d.16.1.1 77169,77170 2eaxA 164 42.57 1qqp2 218 43.97 1qxyA 252 44.75 d.127.1.1 96565 1ok0A 74 47.56 b.5.1.1 93191 1q5yA 85 50.72 d.58.18.4 95950 2bemA 170 54.19 b.1.18.2 116698 1zm8A 259 56.78 1z1zA 131 58.30 d.323.1.1 124366 1cqmA 101 58.95 d.58.14.1 39321 1xcbA 211 59.40 a.4.5.38,c.2.1.12 109552,109553 1llaA 628 59.56 a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 1sk4A 163 59.61 d.118.1.1 105664 2bw4A 340 60.10 b.6.1.3,b.6.1.3 129320,129321 2j2jA 197 60.37 1qwdA 177 60.43 b.60.1.1 96471 2bgiA 272 64.12 1twfB 1224 64.45 e.29.1.1 112726 1l5wA 796 64.97 c.87.1.4 73605 2f5vA 595 65.18 c.3.1.2,d.16.1.1 133010,133011 1f42A 306 65.29 b.1.1.4,b.1.2.1,b.1.2.1 59636,59637,59638 2rdeA 251 65.95 2oh1A 179 66.04 1pyoB 105 66.41 2b0vA 153 66.92 d.113.1.1 127650 2gt1A 326 67.48 1fd9A 213 71.80 d.26.1.1 59771 1b7yA 350 72.41 d.104.1.1 40776 1b34A 119 72.84 b.38.1.1 24796 2hxwA 237 72.85 1qfjA 232 73.21 b.43.4.2,c.25.1.1 25655,31545 1fjjA 159 73.47 b.17.1.2 59852 3bn1A 373 74.52 2bjrA 368 78.95 b.169.1.1,b.169.1.1 128628,128629 1fdr 248 79.25 1w30A 201 81.95 c.61.1.1 114118 2q1mA 130 83.38 2nzhA 113 84.63 1vk1A 242 85.45 d.268.1.2 108634 2eavA 165 87.68 2fmmA 74 88.40 b.34.13.2 133782 1a8pA 258 88.48 b.43.4.2,c.25.1.1 25654,31544 1cbfA 285 89.74 c.90.1.1 35587