# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qqrA 118 0.6861 2bkdN 134 1.536 2hqxA 246 1.930 b.34.9.1 136675 1gvhA 396 7.423 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1g2qA 187 9.230 c.61.1.1 65117 1v0aA 178 11.02 b.18.1.30 119815 2gfaA 119 12.54 b.34.9.1,b.34.9.1 135089,135090 1krhA 338 12.95 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 1em2A 229 13.00 d.129.3.2 41321 1zm8A 259 14.06 1zxfA 155 14.29 d.129.3.5 125771 2yrvA 117 14.32 1s96A 219 15.25 c.37.1.1 98740 2arhA 203 15.67 d.108.1.9 127197 2bemA 170 21.04 b.1.18.2 116698 1gx5A 536 22.06 e.8.1.4 70682 1pfbA 55 22.22 b.34.13.2 94655 1b7yA 350 22.37 d.104.1.1 40776 1oe1A 336 23.99 b.6.1.3,b.6.1.3 86891,86892 1l5wA 796 25.45 c.87.1.4 73605 2j5aA 110 28.16 1q3lA 69 29.72 b.34.13.2 111652 1vk1A 242 31.30 d.268.1.2 108634 1xu1R 42 32.08 g.24.1.2 116036 2asuB 234 32.28 1ok0A 74 33.58 b.5.1.1 93191 2rkqA 169 34.65 2bw4A 340 34.85 b.6.1.3,b.6.1.3 129320,129321 2j01E 206 36.41 2eaxA 164 36.94 2hxwA 237 38.61 2rc5A 314 40.34 1fd9A 213 43.34 d.26.1.1 59771 1f42A 306 45.48 b.1.1.4,b.1.2.1,b.1.2.1 59636,59637,59638 1xcbA 211 46.39 a.4.5.38,c.2.1.12 109552,109553 1w30A 201 46.80 c.61.1.1 114118 1ohtA 215 48.29 d.118.1.1 87036 1kjwA 295 48.43 b.34.2.1,c.37.1.1 68643,68644 2an9A 207 48.60 c.37.1.1 127037 1cfbA 205 48.65 b.1.2.1,b.1.2.1 21991,21992 1ju2A 536 48.74 c.3.1.2,d.16.1.1 77169,77170 1llaA 628 52.05 a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 2dkoB 103 52.54 1pgl2 370 53.24 1a8pA 258 53.93 b.43.4.2,c.25.1.1 25654,31544 3bn1A 373 54.09 2oh1A 179 55.24 2bvrH 252 55.65 2rdeA 251 56.60 1uscA 178 57.82 b.45.1.2 99860 1qqp2 218 59.31 1twfB 1224 60.06 e.29.1.1 112726 1vqoB 338 61.01 b.43.3.2 120363 1hplA 449 65.79 b.12.1.2,c.69.1.19 23639,34787 1sc3B 88 67.57 1am2A 199 68.46 b.86.1.2 28381 1v2xA 194 70.13 c.116.1.1 100274 2vhsA 217 70.40 1n6aA 259 71.41 b.76.2.1,b.85.7.1 80121,80122 2nlwA 105 71.53 2f5vA 595 72.41 c.3.1.2,d.16.1.1 133010,133011 2jdaA 145 73.60 2hbwA 235 74.91 1aohA 147 76.14 b.2.2.2 22401 1ia9A 280 77.06 d.144.1.5 62113 1uv4A 293 79.43 b.67.2.1 119705 1mhnA 59 79.69 b.34.9.1 84964 1sk4A 163 79.84 d.118.1.1 105664 2eavA 165 82.36 1fjjA 159 84.59 b.17.1.2 59852 1w7cA 747 84.73 1qfjA 232 85.30 b.43.4.2,c.25.1.1 25655,31545 1m1fA 110 85.84 b.34.6.2 78401 1nxmA 197 86.48 b.82.1.1 86385 1q5yA 85 86.98 d.58.18.4 95950 1zc1A 208 87.21 3cc1A 433 89.53 2bgiA 272 89.57 2z2iA 191 89.95