# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qqrA 118 0.3409 2bkdN 134 0.7210 1g2qA 187 1.746 c.61.1.1 65117 2dkoB 103 3.818 1w7cA 747 3.829 2gfaA 119 4.291 b.34.9.1,b.34.9.1 135089,135090 1q3lA 69 4.586 b.34.13.2 111652 2arhA 203 4.633 d.108.1.9 127197 1em2A 229 4.923 d.129.3.2 41321 1mi8A 158 5.039 b.86.1.2 91279 1sc3B 88 5.149 2hqxA 246 5.390 b.34.9.1 136675 1qtnB 95 6.598 1kjwA 295 7.073 b.34.2.1,c.37.1.1 68643,68644 1mhnA 59 7.420 b.34.9.1 84964 2psoA 237 8.288 1pfbA 55 9.027 b.34.13.2 94655 2e63A 170 9.252 1s96A 219 9.570 c.37.1.1 98740 2yrvA 117 10.19 1pyoB 105 10.91 2bjrA 368 11.41 b.169.1.1,b.169.1.1 128628,128629 2evrA 246 11.42 b.34.11.3,d.3.1.16 132440,132441 2bvrH 252 11.73 2g3rA 123 11.83 b.34.9.1,b.34.9.1 134570,134571 2hbwA 235 12.68 1v0aA 178 12.75 b.18.1.30 119815 1llaA 628 12.83 a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 1w30A 201 13.12 c.61.1.1 114118 2rdeA 251 13.21 1gvhA 396 13.52 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1xu1R 42 14.02 g.24.1.2 116036 1am2A 199 14.65 b.86.1.2 28381 2c71A 216 14.94 c.6.2.3 130017 2jn9A 105 15.22 2j5aA 110 15.79 1wgsA 133 15.80 b.34.13.3 114622 2f5kA 102 16.83 b.34.13.3 132995 2bw4A 340 17.24 b.6.1.3,b.6.1.3 129320,129321 1oe1A 336 17.60 b.6.1.3,b.6.1.3 86891,86892 2uw1A 338 17.80 1nmeB 92 18.92 2cdpA 160 20.95 2yueA 168 21.23 1fd9A 213 21.42 d.26.1.1 59771 1uheA 97 22.28 1vc3B 97 22.45 1l5wA 796 23.12 c.87.1.4 73605 3bodA 178 23.49 2o5fA 171 23.59 1vqoB 338 24.17 b.43.3.2 120363 1z1zA 131 25.56 d.323.1.1 124366 2j01E 206 25.84 1fdr 248 25.88 1uscA 178 26.48 b.45.1.2 99860 1ekbB 235 27.01 b.47.1.2 26282 2ok8A 316 27.01 2e5yA 133 27.32 1nofA 383 28.77 b.71.1.2,c.1.8.3 92020,92021 1c4rA 182 28.80 b.29.1.4 24229 1at0A 145 29.23 b.86.1.1 28374 1fjjA 159 29.50 b.17.1.2 59852 1qxyA 252 29.65 d.127.1.1 96565 3bn1A 373 29.87 2opkA 112 30.40 1xcbA 211 30.42 a.4.5.38,c.2.1.12 109552,109553 1at0 145 32.10 1vqoQ 96 32.21 b.34.5.1 120378 1xjvA 294 32.21 b.40.4.3,b.40.4.3 115396,115397 2r55A 231 32.29 2nzhA 113 32.75 1f42A 306 32.77 b.1.1.4,b.1.2.1,b.1.2.1 59636,59637,59638 1zxfA 155 33.45 d.129.3.5 125771 1ok0A 74 33.93 b.5.1.1 93191 1rzhL 281 34.75 f.26.1.1 98164 1k5nB 100 35.57 b.1.1.2 77268 2cy7A 396 35.69 1msoB 30 36.05 g.1.1.1 85092 1cfbA 205 36.22 b.1.2.1,b.1.2.1 21991,21992 2oqeA 660 36.38 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 2jg0A 535 39.54 2hd9A 145 40.26 1xniA 118 40.64 b.34.9.1,b.34.9.1 115582,115583 2bneA 241 40.72 c.73.1.3 128824 2i5nL 273 41.32 f.26.1.1 137066 1g8lA 411 42.02 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2jm1A 141 42.27 2ojwA 384 42.49 1nmsA 249 42.84 c.17.1.1 85879 1a8pA 258 43.93 b.43.4.2,c.25.1.1 25654,31544 2a28A 54 44.34 1ep3B 262 44.45 b.43.4.2,c.25.1.3 25664,31554 2iwvA 281 45.90 1e5eA 404 47.76 c.67.1.3 59265 2ivwA 113 47.88 2gt1A 326 48.93 1gx5A 536 49.17 e.8.1.4 70682 2bsxA 253 49.27 c.56.2.1 129128 2z9iA 324 49.53 2h8gA 267 49.71 1krhA 338 49.86 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 2egvA 229 49.91 1fdrA 248 50.87 b.43.4.2,c.25.1.1 25653,31543 2an9A 207 50.91 c.37.1.1 127037 2qe7H 135 51.80 1rzhM 307 52.07 f.26.1.1 98165 2bgiA 272 54.07 1xmtA 103 55.58 d.108.1.1 115561 1m1fA 110 55.77 b.34.6.2 78401 1nxmA 197 56.93 b.82.1.1 86385 2f3nA 76 56.96 a.60.1.2 132885 1y9lA 115 57.04 3c2qA 345 57.24 1n4kA 381 57.90 a.118.22.1,b.42.6.1 79992,79993 1uz5A 402 58.15 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 2nw5A 360 59.11 2aeeA 211 59.42 c.61.1.1 126620 1vqoK 132 59.50 b.39.1.1 120372 3d1cA 369 59.60 1txkA 498 59.93 b.1.18.2,b.30.5.9 107425,107426 2pthA 193 60.21 c.56.3.1 33793 2h41A 95 64.53 1z85A 234 64.71 2oatA 439 65.00 c.67.1.4 34452 2hc8A 113 65.14 2o1cA 150 65.43 1ae9A 179 66.24 d.163.1.1 42153 2qdxA 257 66.33 2i74A 189 67.52 b.18.1.29 137100 1uv4A 293 67.93 b.67.2.1 119705 1fuiA 591 67.96 b.43.2.1,c.85.1.1 25674,35444 1ybdA 239 68.02 c.73.1.3 122884 2vcyA 344 71.53 2pgbB 259 73.66 1kzlA 208 74.84 b.43.4.3,b.43.4.3 77635,77636 2i5nM 323 74.89 f.26.1.1 137067 1xpjA 126 75.76 c.108.1.18 115739 1b7yA 350 75.88 d.104.1.1 40776 1vhyA 257 76.27 b.122.1.2,c.116.1.5 100714,100715 2r16A 182 76.65 2ee1A 64 78.48 1zn8A 180 79.01 c.61.1.1 125376 1twfB 1224 80.32 e.29.1.1 112726 1gu7A 364 81.71 b.35.1.2,c.2.1.1 83321,83322 1vqoA 240 82.74 b.34.5.3,b.40.4.5 120361,120362 2p3yA 491 82.82 3borA 237 83.18 1zc1A 208 83.37 1d02A 202 83.63 c.52.1.8 33313 1ehsA 48 83.99 g.2.1.1 43998 1wi5A 119 87.70 b.40.4.5 114661 1kl9A 182 88.02 a.60.14.1,b.40.4.5 111574,111575 2yyoA 171 88.22 2yxdA 183 88.38 1cqmA 101 88.49 d.58.14.1 39321 3bjeA 349 88.68