# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1em2A	229	5.297	d.129.3.2	41321
2asuB	234	8.873		
2qqrA	118	10.80		
2bkdN	134	11.03		
2j01E	206	14.39		
1vqoB	338	14.75	b.43.3.2	120363
2dkoB	103	15.10		
1sc3B	88	18.43		
1zxfA	155	18.98	d.129.3.5	125771
1v0aA	178	19.02	b.18.1.30	119815
2hqxA	246	20.45	b.34.9.1	136675
1gx5A	536	21.11	e.8.1.4	70682
2rkqA	169	22.51		
1w7cA	747	22.89		
1cfbA	205	23.07	b.1.2.1,b.1.2.1	21991,21992
1y9lA	115	24.38		
2hxwA	237	27.88		
1s96A	219	28.37	c.37.1.1	98740
1z1zA	131	28.58	d.323.1.1	124366
1pyoB	105	29.60		
1llaA	628	29.67	a.85.1.1,a.86.1.1,b.1.18.3	18485,18496,21861
1pfbA	55	32.44	b.34.13.2	94655
1gvhA	396	34.85	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
1xu1R	42	35.82	g.24.1.2	116036
2j5aA	110	36.46		
2gfaA	119	36.73	b.34.9.1,b.34.9.1	135089,135090
2r55A	231	39.55		
1zm8A	259	40.56		
1kjwA	295	42.05	b.34.2.1,c.37.1.1	68643,68644
1q3lA	69	42.52	b.34.13.2	111652
1ohtA	215	42.83	d.118.1.1	87036
1qtnB	95	43.08		
1oe1A	336	45.93	b.6.1.3,b.6.1.3	86891,86892
1xmtA	103	46.62	d.108.1.1	115561
1g2qA	187	49.08	c.61.1.1	65117
2bjrA	368	49.28	b.169.1.1,b.169.1.1	128628,128629
1qqp2	218	50.05		
1ok0A	74	52.18	b.5.1.1	93191
1krhA	338	53.65	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
2cy7A	396	54.89		
1fd9A	213	55.30	d.26.1.1	59771
2arhA	203	57.82	d.108.1.9	127197
1sc3A	178	58.27	c.17.1.1	105416
3bjeA	349	58.91		
1qfjA	232	59.20	b.43.4.2,c.25.1.1	25655,31545
2j2jA	197	63.42		
2eaxA	164	63.83		
1twfB	1224	65.65	e.29.1.1	112726
1dk8A	147	67.38	a.91.1.1	18548
3bn1A	373	71.21		
1q0uA	219	73.02	c.37.1.19	95512
1l5wA	796	73.85	c.87.1.4	73605
1fuiA	591	75.48	b.43.2.1,c.85.1.1	25674,35444
2c71A	216	76.34	c.6.2.3	130017
2ojwA	384	76.56		
2yrvA	117	77.61		
1ehsA	48	78.93	g.2.1.1	43998
1fjjA	159	79.66	b.17.1.2	59852
1cqmA	101	80.70	d.58.14.1	39321
2an9A	207	82.66	c.37.1.1	127037
2bgiA	272	82.90		
1f42A	306	83.08	b.1.1.4,b.1.2.1,b.1.2.1	59636,59637,59638
2bvrH	252	83.39		
2e3nA	255	83.80		
3borA	237	83.88		
1w30A	201	85.22	c.61.1.1	114118
2a4vA	159	86.50	c.47.1.10	126163
1v2xA	194	86.62	c.116.1.1	100274
2jn9A	105	87.62