# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qqrA	118	9.666		
1em2A	229	11.79	d.129.3.2	41321
1zxfA	155	11.81	d.129.3.5	125771
2asuB	234	13.93		
1gx5A	536	16.96	e.8.1.4	70682
1v0aA	178	17.06	b.18.1.30	119815
2j01E	206	17.15		
1vqoB	338	17.46	b.43.3.2	120363
2dkoB	103	18.92		
2bkdN	134	20.65		
2rkqA	169	20.73		
1sc3B	88	21.16		
2hqxA	246	21.32	b.34.9.1	136675
1s96A	219	21.61	c.37.1.1	98740
1gvhA	396	23.86	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
2gfaA	119	30.21	b.34.9.1,b.34.9.1	135089,135090
3bjeA	349	33.38		
1llaA	628	33.45	a.85.1.1,a.86.1.1,b.1.18.3	18485,18496,21861
1pyoB	105	36.54		
1pfbA	55	37.65	b.34.13.2	94655
1q5yA	85	40.61	d.58.18.4	95950
1z1zA	131	41.17	d.323.1.1	124366
1fd9A	213	41.17	d.26.1.1	59771
2hxwA	237	41.25		
1cfbA	205	41.54	b.1.2.1,b.1.2.1	21991,21992
1g2qA	187	41.67	c.61.1.1	65117
1krhA	338	44.98	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
1xu1R	42	47.49	g.24.1.2	116036
1w30A	201	47.67	c.61.1.1	114118
2bvrH	252	48.50		
1kjwA	295	48.61	b.34.2.1,c.37.1.1	68643,68644
1qtnB	95	49.08		
1ohtA	215	49.97	d.118.1.1	87036
2j5aA	110	51.16		
1oe1A	336	51.42	b.6.1.3,b.6.1.3	86891,86892
1q3lA	69	52.32	b.34.13.2	111652
1v2xA	194	55.98	c.116.1.1	100274
2arhA	203	61.31	d.108.1.9	127197
1zm8A	259	61.92		
1vmaA	306	62.68	a.24.13.1,c.37.1.10	108887,108888
2oh1A	179	63.76		
1y9lA	115	64.65		
1fuiA	591	67.03	b.43.2.1,c.85.1.1	25674,35444
1ekbB	235	67.80	b.47.1.2	26282
1twfB	1224	69.67	e.29.1.1	112726
1ml4A	308	70.25	c.78.1.1,c.78.1.1	79255,79256
2eaxA	164	70.80		
1qxyA	252	70.81	d.127.1.1	96565
2yrvA	117	72.23		
1w7cA	747	72.28		
1dk8A	147	72.97	a.91.1.1	18548
2cy7A	396	73.30		
3bn1A	373	73.37		
1qfjA	232	74.04	b.43.4.2,c.25.1.1	25655,31545
1ju2A	536	74.04	c.3.1.2,d.16.1.1	77169,77170
2jn9A	105	74.71		
2a4vA	159	75.42	c.47.1.10	126163
2gt1A	326	77.81		
1sc3A	178	79.68	c.17.1.1	105416
1ehsA	48	80.09	g.2.1.1	43998
1f42A	306	83.31	b.1.1.4,b.1.2.1,b.1.2.1	59636,59637,59638
1cbfA	285	83.32	c.90.1.1	35587
2bw4A	340	84.90	b.6.1.3,b.6.1.3	129320,129321
1qqp2	218	85.59		
2r55A	231	86.52		
2vhsA	217	86.62		
2an9A	207	87.75	c.37.1.1	127037
2bjrA	368	89.98	b.169.1.1,b.169.1.1	128628,128629