# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1em2A	229	7.030	d.129.3.2	41321
2asuB	234	9.630		
2qqrA	118	11.50		
2dkoB	103	11.67		
1sc3B	88	14.95		
2bkdN	134	18.10		
1zxfA	155	18.46	d.129.3.5	125771
2hqxA	246	20.47	b.34.9.1	136675
1vqoB	338	21.79	b.43.3.2	120363
1v0aA	178	22.89	b.18.1.30	119815
2rkqA	169	24.21		
1pyoB	105	24.29		
2j01E	206	25.07		
1gx5A	536	25.50	e.8.1.4	70682
1fd9A	213	29.05	d.26.1.1	59771
1z1zA	131	30.59	d.323.1.1	124366
1llaA	628	30.77	a.85.1.1,a.86.1.1,b.1.18.3	18485,18496,21861
1qtnB	95	31.96		
1cfbA	205	36.83	b.1.2.1,b.1.2.1	21991,21992
1w7cA	747	40.40		
3bjeA	349	40.67		
2j5aA	110	40.95		
1sc3A	178	42.84	c.17.1.1	105416
1xu1R	42	44.01	g.24.1.2	116036
2hxwA	237	45.30		
1pfbA	55	45.66	b.34.13.2	94655
2r55A	231	46.53		
1gvhA	396	46.81	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
1y9lA	115	47.00		
1ohtA	215	47.23	d.118.1.1	87036
1s96A	219	47.55	c.37.1.1	98740
2gfaA	119	47.93	b.34.9.1,b.34.9.1	135089,135090
1oe1A	336	48.15	b.6.1.3,b.6.1.3	86891,86892
1zm8A	259	49.98		
1g2qA	187	53.67	c.61.1.1	65117
1qqp2	218	53.74		
1nmeB	92	57.74		
2j2jA	197	60.18		
1dk8A	147	62.81	a.91.1.1	18548
1kjwA	295	62.97	b.34.2.1,c.37.1.1	68643,68644
1ju2A	536	68.86	c.3.1.2,d.16.1.1	77169,77170
2cy7A	396	72.70		
1krhA	338	73.12	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
2a4vA	159	73.84	c.47.1.10	126163
2eaxA	164	73.91		
1q5yA	85	75.39	d.58.18.4	95950
1q3lA	69	75.44	b.34.13.2	111652
1cqmA	101	77.49	d.58.14.1	39321
1fuiA	591	78.56	b.43.2.1,c.85.1.1	25674,35444
1ok0A	74	78.68	b.5.1.1	93191
1qfjA	232	79.08	b.43.4.2,c.25.1.1	25655,31545
2bemA	170	82.15	b.1.18.2	116698
1ehsA	48	82.55	g.2.1.1	43998
3bn1A	373	82.64		
2arhA	203	87.03	d.108.1.9	127197
2bvrH	252	87.27		
2bjrA	368	88.23	b.169.1.1,b.169.1.1	128628,128629
1f42A	306	88.59	b.1.1.4,b.1.2.1,b.1.2.1	59636,59637,59638
2yrvA	117	89.48