# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2bkdN	134	1.205		
1dk8A	147	4.773	a.91.1.1	18548
1z1zA	131	4.974	d.323.1.1	124366
2qqrA	118	13.72		
2dkoB	103	15.84		
1uj8A	77	16.40	a.159.5.1	119683
2bemA	170	20.51	b.1.18.2	116698
1pfbA	55	21.43	b.34.13.2	94655
1vqoB	338	21.58	b.43.3.2	120363
2dyqA	144	24.91		
2arhA	203	25.71	d.108.1.9	127197
1kjwA	295	27.03	b.34.2.1,c.37.1.1	68643,68644
2jn9A	105	28.02		
2j01E	206	28.82		
1wguA	136	30.79	b.55.1.2	114623
1s96A	219	31.69	c.37.1.1	98740
1j1nA	492	32.23	c.94.1.1	83978
1sc3A	178	34.72	c.17.1.1	105416
2an9A	207	38.77	c.37.1.1	127037
2nr3A	183	50.23		
2nzhA	113	50.91		
1fuiA	591	51.67	b.43.2.1,c.85.1.1	25674,35444
2hqxA	246	56.93	b.34.9.1	136675
1obfO	335	59.65	c.2.1.3,d.81.1.1	86768,86769
2e5yA	133	64.40		
2uw1A	338	64.54		
2o5fA	171	66.64		
3bz6A	183	66.88		
1xu1R	42	70.47	g.24.1.2	116036
2fp3A	316	71.90		
1mhnA	59	71.93	b.34.9.1	84964
1q3lA	69	72.14	b.34.13.2	111652
1gd7A	109	72.93	b.40.4.4	60441
1ok0A	74	74.82	b.5.1.1	93191
2q2iA	116	74.84		
2hxwA	237	76.32		
2bneA	241	76.55	c.73.1.3	128824
1pyoB	105	81.19		
2b2yA	187	81.72	b.34.13.2,b.34.13.2	127754,127755
2cwpA	112	85.75		
1xcbA	211	86.18	a.4.5.38,c.2.1.12	109552,109553
2r55A	231	89.80