# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1em2A 229 4.529 d.129.3.2 41321 2qqrA 118 4.710 2asuB 234 6.513 2j01E 206 9.316 1gvhA 396 9.575 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1g2qA 187 10.30 c.61.1.1 65117 1s96A 219 10.87 c.37.1.1 98740 2bkdN 134 11.68 1v0aA 178 11.69 b.18.1.30 119815 2j5aA 110 12.57 2dkoB 103 13.68 1gx5A 536 13.69 e.8.1.4 70682 2hxwA 237 14.28 1zxfA 155 14.39 d.129.3.5 125771 3bn1A 373 14.78 2rkqA 169 15.20 1vqoB 338 15.29 b.43.3.2 120363 2hqxA 246 16.84 b.34.9.1 136675 1pfbA 55 17.98 b.34.13.2 94655 1q3lA 69 18.60 b.34.13.2 111652 2arhA 203 19.14 d.108.1.9 127197 1ohtA 215 19.81 d.118.1.1 87036 1krhA 338 21.15 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 1w7cA 747 21.29 1z1zA 131 23.28 d.323.1.1 124366 1vk1A 242 23.28 d.268.1.2 108634 2eaxA 164 23.48 1kjwA 295 24.41 b.34.2.1,c.37.1.1 68643,68644 1twfB 1224 24.71 e.29.1.1 112726 1l5wA 796 24.73 c.87.1.4 73605 1cfbA 205 25.42 b.1.2.1,b.1.2.1 21991,21992 1qqp2 218 25.48 1sc3B 88 29.41 1xu1R 42 30.48 g.24.1.2 116036 2an9A 207 30.51 c.37.1.1 127037 2r55A 231 30.72 1zm8A 259 31.32 2gfaA 119 33.98 b.34.9.1,b.34.9.1 135089,135090 2jn9A 105 34.97 1w30A 201 35.19 c.61.1.1 114118 1accA 735 36.99 f.11.1.1 43828 1cqmA 101 38.70 d.58.14.1 39321 1pyoB 105 41.97 1llaA 628 42.30 a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 2opkA 112 42.67 1qwdA 177 43.34 b.60.1.1 96471 1ju2A 536 44.68 c.3.1.2,d.16.1.1 77169,77170 1ok0A 74 45.61 b.5.1.1 93191 1xmzA 241 46.10 1nmeB 92 46.15 1fd9A 213 46.44 d.26.1.1 59771 1c4kA 730 47.91 c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 1q0uA 219 50.05 c.37.1.19 95512 2bjrA 368 50.23 b.169.1.1,b.169.1.1 128628,128629 2oh5A 248 51.30 3bjeA 349 51.33 2bemA 170 54.08 b.1.18.2 116698 1sk4A 163 54.18 d.118.1.1 105664 1qtnB 95 54.31 1xmtA 103 55.74 d.108.1.1 115561 1sc3A 178 57.09 c.17.1.1 105416 2rdeA 251 57.16 2oatA 439 57.24 c.67.1.4 34452 2bvrH 252 57.43 3borA 237 58.03 1iqqA 200 58.41 d.124.1.1 66274 2gmsA 390 58.62 1b7yA 350 59.23 d.104.1.1 40776 2bgiA 272 64.25 2q1mA 130 66.97 2c71A 216 68.19 c.6.2.3 130017 2eavA 165 68.75 2gecA 139 68.78 b.148.1.1 135059 1am2A 199 69.51 b.86.1.2 28381 2bsxA 253 69.53 c.56.2.1 129128 2dyqA 144 70.40 1m1fA 110 71.45 b.34.6.2 78401 2h8gA 267 72.53 1f42A 306 72.58 b.1.1.4,b.1.2.1,b.1.2.1 59636,59637,59638 1oe1A 336 73.12 b.6.1.3,b.6.1.3 86891,86892 2gnrA 145 73.25 2aeeA 211 73.39 c.61.1.1 126620 2vhsA 217 73.70 3brzA 439 75.35 2gt1A 326 76.57 1fdr 248 76.65 1ekbB 235 76.92 b.47.1.2 26282 1y9lA 115 78.85 1g8lA 411 79.37 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1q5yA 85 80.76 d.58.18.4 95950 2psoA 237 82.19 2jdaA 145 82.79 1uz5A 402 83.10 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1v2xA 194 83.27 c.116.1.1 100274 1pgl2 370 83.88 1fjjA 159 84.42 b.17.1.2 59852 1fc4A 401 84.96 c.67.1.4 59760 2bxxA 134 85.16 b.148.1.1 129446 2yrvA 117 86.05 1qfjA 232 87.09 b.43.4.2,c.25.1.1 25655,31545 2ofzA 138 87.55 2h0vA 338 88.44