# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1r6vA 671 0.6556 c.41.1.1 111710 1xf1A 926 0.9547 2eceA 462 4.027 2sliA 679 4.281 b.29.1.9,b.68.1.1 24274,27611 1juhA 350 5.467 b.82.1.5 71884 2cqsA 842 6.590 2aaaA 484 6.735 b.71.1.1,c.1.8.1 27777,28764 1txvA 452 7.095 b.69.8.1 112783 1suuA 312 7.891 b.68.10.1 99006 2ghpA 292 9.101 d.58.7.1,d.58.7.1,d.58.7.1 135184,135185,135186 2hqxA 246 9.182 b.34.9.1 136675 2bpa1 426 10.29 2eabA 899 11.48 2i5nL 273 11.91 f.26.1.1 137066 1s96A 219 15.53 c.37.1.1 98740 2as0A 396 16.47 b.122.1.9,c.66.1.51 127227,127228 1em2A 229 18.99 d.129.3.2 41321 2psoA 237 19.37 1y1nA 291 19.60 1ynfA 458 21.32 d.126.1.7 123723 2qqrA 118 23.56 3biqA 467 24.84 2jixB 225 24.86 1vjjA 692 26.57 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 100814,100815,100816,100817 1h09A 338 27.52 b.109.1.1,c.1.8.8 83420,83421 1gpeA 587 28.14 c.3.1.2,d.16.1.1 30387,37951 1rc6A 261 28.70 b.82.1.11 97287 1nmsA 249 29.13 c.17.1.1 85879 1se8A 301 29.74 b.40.4.3 105448 1t90A 486 31.63 2a6hC 1119 33.75 e.29.1.1 126264 2bkdN 134 33.96 2an9A 207 34.14 c.37.1.1 127037 2fp8A 322 35.50 1ksiA 642 37.44 b.30.2.1,d.17.2.1,d.17.2.1 24408,38043,38044 1y9uA 323 39.05 c.94.1.1 116594 2j6iA 364 39.85 1d4aA 273 41.99 c.23.5.3 31219 1zxfA 155 42.75 d.129.3.5 125771 1ed8A 449 44.14 c.76.1.1 34988 2bdvA 231 46.57 d.303.1.1 128345 1kbpA 432 46.72 b.1.12.1,d.159.1.1 22349,42068 1z1zA 131 47.04 d.323.1.1 124366 2bwrA 401 47.39 1yifA 533 49.78 b.29.1.23,b.67.2.1 123283,123284 1rmg 422 50.40 1qtnB 95 51.37 1cbfA 285 51.61 c.90.1.1 35587 1ni5A 433 51.62 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1xezA 721 51.74 1hzoA 271 52.46 e.3.1.1 71092 1i0dA 332 53.04 c.1.9.3 61487 2fhdA 153 55.55 2bemA 170 55.92 b.1.18.2 116698 3cpxA 321 56.09 2j01E 206 57.13 2gfaA 119 58.50 b.34.9.1,b.34.9.1 135089,135090 1y9lA 115 58.62 2essA 248 58.68 d.38.1.8,d.38.1.8 132346,132347 1vj0A 380 58.87 b.35.1.2,c.2.1.1 100786,100787 2rkqA 169 59.91 1bhe 376 61.29 4dpvZ 584 62.47 b.121.5.2 23377 1poiA 317 63.19 c.124.1.2 34153 1pc3A 350 64.00 c.94.1.1 104102 1ecfA 504 64.67 c.61.1.1,d.153.1.1 34053,41820 1hfuA 503 64.80 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 2bvrH 252 64.86 3bh1A 507 65.29 1v2xA 194 65.29 c.116.1.1 100274 2hxwA 237 66.64 1qo8A 566 67.16 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 2vhxA 377 67.82 3b5qA 482 71.04 2evrA 246 71.41 b.34.11.3,d.3.1.16 132440,132441 2pq6A 482 72.67 1hp1A 516 73.51 d.114.1.1,d.159.1.2 70976,70977 1goiA 499 73.66 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 1vf8A 377 75.08 c.1.8.5,d.26.3.1 120029,120030 1f46A 140 75.18 d.129.4.1 59643 2fq6A 415 75.25 c.67.1.3 133939 2oh1A 179 75.61 3cddA 361 77.03 2ow6A 1045 80.39 1k5nB 100 80.47 b.1.1.2 77268 1lnsA 763 80.50 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 3bb7A 321 80.54 1ms9A 648 80.85 b.29.1.15,b.68.1.1 85088,85089 2e27H 126 82.82 1vdzA 588 84.11 2h2tB 175 84.39 1qxyA 252 85.28 d.127.1.1 96565 1ze3C 205 85.46 b.1.11.1,b.7.2.1 124974,124975 2r78A 117 86.74 2gl6A 392 86.98 1fviA 297 87.14 b.40.4.6,d.142.2.1 25364,41578 1vqoB 338 88.67 b.43.3.2 120363 1ohtA 215 88.81 d.118.1.1 87036 2fncA 381 89.16