# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1em2A	229	5.650	d.129.3.2	41321
2qqrA	118	6.453		
1zxfA	155	7.767	d.129.3.5	125771
2hqxA	246	9.914	b.34.9.1	136675
1s96A	219	11.15	c.37.1.1	98740
1llaA	628	12.91	a.85.1.1,a.86.1.1,b.1.18.3	18485,18496,21861
1gx5A	536	13.27	e.8.1.4	70682
2bkdN	134	13.42		
2asuB	234	13.54		
2dkoB	103	14.01		
2j01E	206	15.00		
2rkqA	169	18.23		
2hxwA	237	19.16		
1y9lA	115	21.66		
1z1zA	131	21.66	d.323.1.1	124366
1gvhA	396	22.28	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
1xu1R	42	22.95	g.24.1.2	116036
1ju2A	536	23.41	c.3.1.2,d.16.1.1	77169,77170
1vqoB	338	23.52	b.43.3.2	120363
1g2qA	187	23.89	c.61.1.1	65117
1ohtA	215	24.05	d.118.1.1	87036
1kjwA	295	24.45	b.34.2.1,c.37.1.1	68643,68644
1pfbA	55	25.30	b.34.13.2	94655
1q5yA	85	25.78	d.58.18.4	95950
1q3lA	69	25.94	b.34.13.2	111652
1cfbA	205	26.88	b.1.2.1,b.1.2.1	21991,21992
2eaxA	164	27.14		
1v2xA	194	27.79	c.116.1.1	100274
1v0aA	178	29.72	b.18.1.30	119815
2j5aA	110	32.03		
1sc3A	178	33.16	c.17.1.1	105416
2gfaA	119	33.19	b.34.9.1,b.34.9.1	135089,135090
1qqp2	218	33.48		
1sc3B	88	33.97		
1vk1A	242	34.64	d.268.1.2	108634
2an9A	207	34.88	c.37.1.1	127037
3bn1A	373	37.42		
1ekbB	235	38.20	b.47.1.2	26282
2h0vA	338	42.87		
1nmeB	92	43.44		
1pyoB	105	43.72		
2r55A	231	43.83		
1fd9A	213	45.32	d.26.1.1	59771
1l5wA	796	47.46	c.87.1.4	73605
2arhA	203	48.00	d.108.1.9	127197
1zm8A	259	49.59		
1cbfA	285	49.76	c.90.1.1	35587
1qtnB	95	51.69		
1sk4A	163	52.58	d.118.1.1	105664
1krhA	338	52.89	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
1accA	735	54.89	f.11.1.1	43828
1iqqA	200	59.63	d.124.1.1	66274
2eavA	165	61.73		
2bvrH	252	63.49		
2bjrA	368	67.63	b.169.1.1,b.169.1.1	128628,128629
1w30A	201	72.53	c.61.1.1	114118
1f42A	306	75.45	b.1.1.4,b.1.2.1,b.1.2.1	59636,59637,59638
2gt1A	326	77.99		
2ghpA	292	79.74	d.58.7.1,d.58.7.1,d.58.7.1	135184,135185,135186
1cqmA	101	85.86	d.58.14.1	39321
2dyqA	144	86.62		
2j2jA	197	89.52