# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qqrA	118	7.831		
1zxfA	155	8.946	d.129.3.5	125771
1em2A	229	9.002	d.129.3.2	41321
2bkdN	134	10.38		
2hqxA	246	14.78	b.34.9.1	136675
1cfbA	205	15.72	b.1.2.1,b.1.2.1	21991,21992
2asuB	234	15.75		
1v0aA	178	19.23	b.18.1.30	119815
1gx5A	536	20.14	e.8.1.4	70682
2j01E	206	20.19		
2dkoB	103	22.80		
2rkqA	169	24.98		
1z1zA	131	26.73	d.323.1.1	124366
1s96A	219	29.73	c.37.1.1	98740
1llaA	628	29.81	a.85.1.1,a.86.1.1,b.1.18.3	18485,18496,21861
1fd9A	213	29.87	d.26.1.1	59771
1sc3B	88	30.97		
1g2qA	187	32.03	c.61.1.1	65117
1vqoB	338	33.24	b.43.3.2	120363
1oe1A	336	36.80	b.6.1.3,b.6.1.3	86891,86892
1dk8A	147	38.95	a.91.1.1	18548
1twfB	1224	40.49	e.29.1.1	112726
1xu1R	42	47.48	g.24.1.2	116036
1w7cA	747	47.67		
1qqp2	218	47.94		
3bjeA	349	48.03		
1gvhA	396	48.23	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
2j5aA	110	48.74		
2gfaA	119	48.93	b.34.9.1,b.34.9.1	135089,135090
2eaxA	164	52.14		
2bemA	170	52.22	b.1.18.2	116698
1xcbA	211	53.97	a.4.5.38,c.2.1.12	109552,109553
1ohtA	215	54.70	d.118.1.1	87036
1pyoB	105	55.37		
3bn1A	373	58.72		
1qtnB	95	59.28		
1v2xA	194	61.23	c.116.1.1	100274
1ju2A	536	64.44	c.3.1.2,d.16.1.1	77169,77170
1nmeB	92	65.66		
2hxwA	237	67.29		
1q5yA	85	67.97	d.58.18.4	95950
1xmzA	241	68.13		
2yrvA	117	71.01		
1zm8A	259	71.07		
2eavA	165	71.18		
2r55A	231	71.69		
1ehsA	48	78.12	g.2.1.1	43998
3borA	237	79.39		
2c71A	216	81.79	c.6.2.3	130017
1pfbA	55	81.96	b.34.13.2	94655
2j2jA	197	82.09		
1y9lA	115	83.28		
2bvrH	252	86.63		
2dyqA	144	86.84		
2bjrA	368	86.92	b.169.1.1,b.169.1.1	128628,128629
1sc3A	178	87.39	c.17.1.1	105416
1l5wA	796	88.88	c.87.1.4	73605
1ok0A	74	89.35	b.5.1.1	93191
3b93A	133	89.46