# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2dkoB	103	6.621		
1zxfA	155	8.193	d.129.3.5	125771
1sc3B	88	8.249		
2qqrA	118	9.805		
1em2A	229	9.939	d.129.3.2	41321
2bkdN	134	10.70		
1qtnB	95	14.58		
1pyoB	105	14.98		
1llaA	628	15.20	a.85.1.1,a.86.1.1,b.1.18.3	18485,18496,21861
1z1zA	131	18.57	d.323.1.1	124366
1gvhA	396	18.89	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
2j5aA	110	19.20		
1s96A	219	19.64	c.37.1.1	98740
1w7cA	747	21.93		
1nmeB	92	22.43		
1cfbA	205	23.67	b.1.2.1,b.1.2.1	21991,21992
1xu1R	42	24.28	g.24.1.2	116036
2uw1A	338	26.05		
2hqxA	246	26.58	b.34.9.1	136675
2asuB	234	27.30		
1rzhL	281	27.79	f.26.1.1	98164
1vqoB	338	28.22	b.43.3.2	120363
1g2qA	187	28.37	c.61.1.1	65117
3borA	237	30.07		
2gfaA	119	31.43	b.34.9.1,b.34.9.1	135089,135090
2psoA	237	32.58		
2hxwA	237	33.52		
2i5nL	273	35.30	f.26.1.1	137066
1gx5A	536	35.99	e.8.1.4	70682
2j01E	206	37.15		
1pfbA	55	38.17	b.34.13.2	94655
1y9lA	115	38.47		
2arhA	203	40.66	d.108.1.9	127197
1v0aA	178	41.12	b.18.1.30	119815
1q0uA	219	41.39	c.37.1.19	95512
1vkcA	158	41.55	d.108.1.1	113663
2bvrH	252	44.75		
1rzhM	307	45.35	f.26.1.1	98165
2ojwA	384	46.09		
1ehsA	48	47.56	g.2.1.1	43998
2cr4A	126	48.38		
1ju2A	536	49.50	c.3.1.2,d.16.1.1	77169,77170
2f3nA	76	50.67	a.60.1.2	132885
1f42A	306	51.52	b.1.1.4,b.1.2.1,b.1.2.1	59636,59637,59638
2bjrA	368	51.54	b.169.1.1,b.169.1.1	128628,128629
1w30A	201	52.59	c.61.1.1	114118
1q3lA	69	52.87	b.34.13.2	111652
3bn1A	373	54.18		
2r55A	231	54.50		
2j2jA	197	55.18		
2yrvA	117	59.44		
2gxqA	207	59.50		
1kjwA	295	59.82	b.34.2.1,c.37.1.1	68643,68644
2c71A	216	64.05	c.6.2.3	130017
2i5nM	323	65.84	f.26.1.1	137067
1ok0A	74	66.28	b.5.1.1	93191
3bjeA	349	67.10		
1dk8A	147	68.03	a.91.1.1	18548
1fd9A	213	68.17	d.26.1.1	59771
2opkA	112	71.40		
1uscA	178	72.80	b.45.1.2	99860
2cy7A	396	74.06		
1ohtA	215	74.09	d.118.1.1	87036
1dv0A	47	75.83	a.5.2.1	16289
1fjjA	159	80.07	b.17.1.2	59852
2an9A	207	81.82	c.37.1.1	127037
1oq9A	363	81.96	a.25.1.2	87257
1fcyA	236	83.24	a.123.1.1	19282
1fuiA	591	83.73	b.43.2.1,c.85.1.1	25674,35444
1oe1A	336	84.02	b.6.1.3,b.6.1.3	86891,86892
1nmsA	249	84.52	c.17.1.1	85879