# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1em2A	229	3.335	d.129.3.2	41321
2bkdN	134	6.453		
1zxfA	155	6.489	d.129.3.5	125771
1v0aA	178	7.108	b.18.1.30	119815
2qqrA	118	7.460		
2dkoB	103	7.621		
1vqoB	338	8.689	b.43.3.2	120363
1w7cA	747	9.879		
1sc3B	88	11.34		
2j01E	206	12.59		
2hqxA	246	13.39	b.34.9.1	136675
1cfbA	205	14.06	b.1.2.1,b.1.2.1	21991,21992
1qtnB	95	15.18		
1s96A	219	16.62	c.37.1.1	98740
1z1zA	131	19.01	d.323.1.1	124366
1pyoB	105	19.40		
2asuB	234	19.89		
1gx5A	536	20.01	e.8.1.4	70682
1g2qA	187	20.87	c.61.1.1	65117
1llaA	628	21.59	a.85.1.1,a.86.1.1,b.1.18.3	18485,18496,21861
1nmeB	92	21.83		
1fd9A	213	23.25	d.26.1.1	59771
1ju2A	536	28.49	c.3.1.2,d.16.1.1	77169,77170
2j5aA	110	28.87		
1xu1R	42	29.75	g.24.1.2	116036
1y9lA	115	31.60		
2r55A	231	33.12		
2arhA	203	33.59	d.108.1.9	127197
1pfbA	55	34.95	b.34.13.2	94655
1vkcA	158	36.17	d.108.1.1	113663
2gfaA	119	37.76	b.34.9.1,b.34.9.1	135089,135090
1zm8A	259	39.59		
1twfB	1224	40.51	e.29.1.1	112726
2bvrH	252	40.98		
1gvhA	396	42.16	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
2c71A	216	43.70	c.6.2.3	130017
2j2jA	197	44.92		
1mhnA	59	46.57	b.34.9.1	84964
2oh5A	248	46.61		
2hxwA	237	53.17		
1q0uA	219	53.86	c.37.1.19	95512
1oe1A	336	54.54	b.6.1.3,b.6.1.3	86891,86892
3borA	237	55.60		
2yrvA	117	56.39		
2bw4A	340	58.04	b.6.1.3,b.6.1.3	129320,129321
1fuiA	591	58.79	b.43.2.1,c.85.1.1	25674,35444
1uheA	97	60.31		
2uw1A	338	64.73		
2rkqA	169	64.80		
1q3lA	69	64.83	b.34.13.2	111652
1dv0A	47	65.73	a.5.2.1	16289
2bjrA	368	65.80	b.169.1.1,b.169.1.1	128628,128629
2bemA	170	67.31	b.1.18.2	116698
1l5wA	796	68.78	c.87.1.4	73605
1qqp2	218	70.43		
2gxqA	207	70.53		
2an9A	207	70.64	c.37.1.1	127037
1ehsA	48	72.40	g.2.1.1	43998
1g8lA	411	73.12	b.85.6.1,b.103.1.1,c.57.1.2	60365,60366,60367
1ok0A	74	75.42	b.5.1.1	93191
2psoA	237	75.69		
1nmsA	249	77.24	c.17.1.1	85879
2i5nL	273	77.73	f.26.1.1	137066
1iqqA	200	80.48	d.124.1.1	66274
1bo4A	168	81.92	d.108.1.1	40798
1qxyA	252	84.00	d.127.1.1	96565
1rzhL	281	84.14	f.26.1.1	98164
2jdaA	145	84.29		
2cr4A	126	84.49		
1lshA	1056	85.20	a.118.4.1,f.7.1.1,f.7.1.1	74242,74243,74244
1sc3A	178	86.73	c.17.1.1	105416
2opkA	112	87.44		
1accA	735	87.45	f.11.1.1	43828
1uz5A	402	88.46	b.85.6.1,b.103.1.1,c.57.1.2	100217,100218,100219
3bjeA	349	88.60		
2nw5A	360	89.66