# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1dk8A	147	1.213	a.91.1.1	18548
2bkdN	134	4.070		
2asuB	234	5.421		
2hdeA	148	10.76		
1fjjA	159	12.55	b.17.1.2	59852
1rzhL	281	17.36	f.26.1.1	98164
2i5nL	273	19.07	f.26.1.1	137066
1sc3A	178	20.92	c.17.1.1	105416
1wguA	136	25.50	b.55.1.2	114623
2hxwA	237	28.47		
1em2A	229	31.06	d.129.3.2	41321
1z1zA	131	34.83	d.323.1.1	124366
1xxgA	233	39.35		
1j1nA	492	39.40	c.94.1.1	83978
2oj5A	165	42.26		
2glfA	450	43.40		
2nr3A	183	46.87		
2r55A	231	47.61		
2j4xA	213	48.23		
2j5aA	110	53.41		
1uj8A	77	56.04	a.159.5.1	119683
1vmaA	306	56.48	a.24.13.1,c.37.1.10	108887,108888
2qqrA	118	56.65		
3bz6A	183	60.84		
2fp3A	316	61.38		
1ok0A	74	61.84	b.5.1.1	93191
2bneA	241	61.96	c.73.1.3	128824
1jssA	224	61.99	d.129.3.2	71844
1op4A	159	62.73	b.1.6.1	93397
1obfO	335	64.02	c.2.1.3,d.81.1.1	86768,86769
2dyqA	144	67.17		
1s96A	219	67.23	c.37.1.1	98740
1txkA	498	72.92	b.1.18.2,b.30.5.9	107425,107426
2qggA	182	74.36		
2jn9A	105	76.12		
1ybdA	239	77.88	c.73.1.3	122884
2bwkA	121	78.50		
2hqxA	246	80.13	b.34.9.1	136675
2c71A	216	81.72	c.6.2.3	130017
2r78A	117	82.76		
1pgl2	370	83.70		
2j2jA	197	85.23		
1vqoB	338	85.95	b.43.3.2	120363
1nmsA	249	87.46	c.17.1.1	85879
2r7gA	347	88.84