# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2bkdN	134	2.580		
1dk8A	147	11.23	a.91.1.1	18548
1rzhL	281	15.50	f.26.1.1	98164
2i5nL	273	16.07	f.26.1.1	137066
2rkqA	169	18.65		
2j5aA	110	18.97		
2jn9A	105	24.46		
2axtD	352	25.36		
1rzhM	307	28.06	f.26.1.1	98165
2asuB	234	30.17		
1b12A	248	33.88	b.87.1.2	28388
2qqrA	118	34.13		
1kjwA	295	35.22	b.34.2.1,c.37.1.1	68643,68644
1nmsA	249	37.54	c.17.1.1	85879
1ohtA	215	37.95	d.118.1.1	87036
1vqoB	338	38.08	b.43.3.2	120363
2eavA	165	42.64		
2i5nM	323	46.47	f.26.1.1	137067
1vmaA	306	51.67	a.24.13.1,c.37.1.10	108887,108888
2eaxA	164	51.77		
1ok0A	74	54.54	b.5.1.1	93191
1am2A	199	55.46	b.86.1.2	28381
2j01E	206	58.36		
1lba	146	58.87		
1cqmA	101	60.41	d.58.14.1	39321
1lbaA	146	65.43	d.118.1.1	41062
2cy7A	396	66.14		
2gfaA	119	71.57	b.34.9.1,b.34.9.1	135089,135090
1fcyA	236	72.11	a.123.1.1	19282
1pfbA	55	72.87	b.34.13.2	94655
2bneA	241	73.46	c.73.1.3	128824
2dkoB	103	78.12		
2hqxA	246	84.27	b.34.9.1	136675
2oqkA	117	85.19