# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2bkdN 134 0.7319 2ckkA 127 0.7642 2fhdA 153 1.006 1h9mA 145 1.669 b.40.6.2,b.40.6.2 60833,60834 1kzlA 208 2.538 b.43.4.3,b.43.4.3 77635,77636 2i46A 161 2.799 1sawA 225 3.454 d.177.1.1 112050 2g3rA 123 5.247 b.34.9.1,b.34.9.1 134570,134571 2qqrA 118 5.430 1i8dA 213 5.881 b.43.4.3,b.43.4.3 61953,61954 1wzoA 246 6.353 2p0kA 212 9.162 2e63A 170 10.65 1khcA 147 11.38 b.34.9.2 68608 1fl0A 171 11.59 b.40.4.4 25315 1at0A 145 11.97 b.86.1.1 28374 1vqoA 240 12.08 b.34.5.3,b.40.4.5 120361,120362 2cwpA 112 12.14 1gttA 429 12.69 d.177.1.1,d.177.1.1 70529,70530 2hqxA 246 13.95 b.34.9.1 136675 1bdoA 80 14.06 b.84.1.1 28214 2f5kA 102 14.63 b.34.13.3 132995 1at0 145 14.68 1oz2A 331 16.51 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 1xw3A 110 17.15 1bdo 80 18.95 2f1lA 187 19.44 b.41.1.4,b.43.3.4 132780,132781 2ho9A 167 20.27 1nkqA 259 21.15 d.177.1.1 103862 2pa8D 265 21.35 1sv6A 269 21.75 d.177.1.1 106043 2eb4A 267 27.21 2q18X 293 28.22 1hyoA 421 29.02 b.34.8.1,d.177.1.1 59001,59002 1pfbA 55 29.05 b.34.13.2 94655 2r58A 265 29.95 2bivA 243 31.13 b.34.9.3,b.34.9.3 128592,128593 1jhfA 202 31.44 a.4.5.2,b.87.1.1 63057,63058 2oqkA 117 32.40 2gfaA 119 32.80 b.34.9.1,b.34.9.1 135089,135090 1wfyA 104 35.71 d.15.1.5 114597 1yvcA 70 38.05 b.40.4.12 124094 2dfuA 264 39.45 1xniA 118 40.65 b.34.9.1,b.34.9.1 115582,115583 2yyoA 171 41.04 2yxxA 386 42.73 1mhnA 59 43.20 b.34.9.1 84964 1mi8A 158 45.30 b.86.1.2 91279 1go3E 187 46.02 b.40.4.5,d.230.1.1 83054,83055 1twiA 434 46.29 b.49.2.3,c.1.6.1 107399,107400 2z1cA 75 48.67 1smxA 96 49.92 b.40.4.5 105772 2nr4A 213 50.03 2pth 193 50.28 2g50A 530 51.55 b.58.1.1,c.1.12.1,c.49.1.1 134618,134619,134620 1n4kA 381 52.99 a.118.22.1,b.42.6.1 79992,79993 2qxxA 190 54.92 2ej8A 160 55.66 1b9mA 265 56.32 a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 2j66A 428 56.37 1q6uA 245 56.55 d.26.1.1 95998 1vbvA 105 58.60 b.34.17.1 119965 2z2iA 191 58.94 2jh2A 148 60.14 2as9A 210 60.20 1rlwA 126 60.41 b.7.1.1 23177 2pthA 193 60.99 c.56.3.1 33793 1gutA 68 61.22 b.40.6.1 65576 1gnyA 153 61.64 b.18.1.11 65404 2qdlA 165 61.95 2j5uA 255 63.25 2eqjA 66 66.46 1y14B 171 66.91 b.40.4.5,d.230.1.1 116323,116324 3d8dA 148 67.04 2qggA 182 68.40 1wkbA 810 69.69 2pljA 419 70.24 1xyiA 66 70.98 2sga 181 71.49 1vkyA 347 71.72 e.53.1.1 108696 1g31A 111 71.98 b.35.1.1 24656 2z9iA 324 72.69 2g6tA 306 73.60 c.147.1.1 134717 2f4lA 297 74.70 b.23.3.1 132927 2olgA 278 76.03 1q3lA 69 77.58 b.34.13.2 111652 1k47A 337 78.14 d.14.1.5,d.58.26.4 72040,72041 2fcoA 200 78.49 2b3gA 123 80.10 b.40.4.3 127786 7odcA 424 80.20 b.49.2.3,c.1.6.1 26488,28650 1yqbA 100 83.29 d.15.1.1 123876 2qx2A 344 85.11 2pu9B 74 85.19 1gr3A 160 86.26 b.22.1.1 65476 2nsqA 155 88.52 1wgsA 133 89.02 b.34.13.3 114622