Best Alignments for TR429

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2bkdN	5.3977e+00	2bkdN/TR429-2bkdN-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2qqrA	8.7099e+00	2qqrA/TR429-2qqrA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1mhnA	1.2376e+01	1mhnA/TR429-1mhnA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.9.1
2hqxA	1.3475e+01	2hqxA/TR429-2hqxA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.9.1
1em2A	1.5936e+01	1em2A/TR429-1em2A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.129.3.2
1wgsA	1.6013e+01	1wgsA/TR429-1wgsA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.13.3
1r7aA	2.3467e+01	1r7aA/TR429-1r7aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.71.1.1 c.1.8.1
1edgA	2.9214e+01	1edgA/TR429-1edgA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.1.8.3
1qwdA	4.2710e+01	1qwdA/TR429-1qwdA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.60.1.1
1jj2B	4.3407e+01	1jj2B/TR429-1jj2B-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.43.3.2
2yrvA	4.8218e+01	2yrvA/TR429-2yrvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1qtnB	5.0535e+01	1qtnB/TR429-1qtnB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1louA	5.1086e+01	1louA/TR429-1louA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.58.14.1
2dkoB	5.7293e+01	2dkoB/TR429-2dkoB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2f2lX	5.7719e+01	2f2lX/TR429-2f2lX-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.118.1.1
1nmeB	6.1626e+01	1nmeB/TR429-1nmeB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2gfaA	6.1641e+01	2gfaA/TR429-2gfaA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.9.1 b.34.9.1
1wznA	6.3518e+01	1wznA/TR429-1wznA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.66.1.43
2f5kA	6.6302e+01	2f5kA/TR429-2f5kA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.13.3
1pdqA	6.6685e+01	1pdqA/TR429-1pdqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.13.2

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001