# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2bkdN	134	1.697		
1em2A	229	1.958	d.129.3.2	41321
2qqrA	118	2.236		
2hqxA	246	4.143	b.34.9.1	136675
2f2lX	167	6.338	d.118.1.1	132844
1mhnA	59	6.996	b.34.9.1	84964
1louA	101	10.60	d.58.14.1	39323
1r7aA	504	10.64	b.71.1.1,c.1.8.1	97192,97193
1qwdA	177	13.03	b.60.1.1	96471
1edgA	380	15.96	c.1.8.3	28807
1wgsA	133	17.16	b.34.13.3	114622
2yrvA	117	17.16		
1wznA	252	20.29	c.66.1.43	121525
1pdqA	72	22.89	b.34.13.2	94590
1cqmA	101	26.27	d.58.14.1	39321
1jfxA	217	26.88	c.1.8.8	62943
1gvhA	396	30.74	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
2h8gA	267	34.88		
1kmkA	406	35.08	c.67.1.3	68696
1jj2B	337	36.40	b.43.3.2	63086
1qtnB	95	37.94		
2dkoB	103	38.73		
1z9nA	177	38.86		
3chvA	284	39.20		
1xu1R	42	40.37	g.24.1.2	116036
1y9lA	115	40.70		
2r55A	231	40.70		
2jepA	395	41.73		
2gfaA	119	43.16	b.34.9.1,b.34.9.1	135089,135090
1vp2A	208	43.43	c.51.4.1	113933
1zdsA	336	43.81	b.6.1.3,b.6.1.3	124952,124953
2f2lA	167	44.36	d.118.1.1	132843
1ok0A	74	44.37	b.5.1.1	93191
1pfbA	55	45.89	b.34.13.2	94655
1oycA	400	46.35	c.1.4.1	28603
1nmeB	92	47.71		
1hoe	74	48.68		
2arcA	164	49.78	b.82.4.1	28148
2r6hA	290	53.21		
1iznB	277	57.59	e.43.1.2	83848
1ohtA	215	57.92	d.118.1.1	87036
1zjrA	211	60.99		
1v0aA	178	63.77	b.18.1.30	119815
1q3lA	69	64.74	b.34.13.2	111652
1zxfA	155	67.19	d.129.3.5	125771
1l1qA	186	69.49	c.61.1.1	77653
2evvA	207	70.12		
1sc3B	88	70.14		
1hl9A	449	74.19	b.71.1.3,c.1.8.11	90650,90651
3besR	250	75.16		
2oasA	436	78.17		
1tib	269	78.67		
2aqpA	164	80.19		
2bjrA	368	81.82	b.169.1.1,b.169.1.1	128628,128629
1d2eA	397	83.57	b.43.3.1,b.44.1.1,c.37.1.8	25701,25741,32136
2g39A	497	85.00	c.124.1.2,c.124.1.2	134553,134554
1xcbA	211	86.08	a.4.5.38,c.2.1.12	109552,109553
3b34A	891	86.46		
2hftA	218	89.00	b.1.2.1,b.1.2.1	21951,21952