# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2bkdN	134	0.4022		
2qqrA	118	0.5476		
2hqxA	246	2.280	b.34.9.1	136675
1mhnA	59	2.583	b.34.9.1	84964
1r7aA	504	3.918	b.71.1.1,c.1.8.1	97192,97193
1wgsA	133	5.714	b.34.13.3	114622
1em2A	229	6.287	d.129.3.2	41321
2yrvA	117	8.217		
1wznA	252	13.22	c.66.1.43	121525
2gfaA	119	16.01	b.34.9.1,b.34.9.1	135089,135090
2arcA	164	19.27	b.82.4.1	28148
2gduA	504	19.43	b.71.1.1,c.1.8.1	135032,135033
1edgA	380	23.08	c.1.8.3	28807
1louA	101	24.30	d.58.14.1	39323
2h8gA	267	24.56		
1d2eA	397	25.93	b.43.3.1,b.44.1.1,c.37.1.8	25701,25741,32136
2bemA	170	26.31	b.1.18.2	116698
1jfxA	217	28.35	c.1.8.8	62943
1qwdA	177	28.53	b.60.1.1	96471
1xu1R	42	30.29	g.24.1.2	116036
1mi8A	158	30.98	b.86.1.2	91279
1v0aA	178	31.73	b.18.1.30	119815
1jj2B	337	34.73	b.43.3.2	63086
1kmkA	406	35.63	c.67.1.3	68696
2r6hA	290	35.80		
2j01E	206	37.80		
2ivwA	113	41.58		
2f5kA	102	41.84	b.34.13.3	132995
1qtnB	95	42.15		
1gvhA	396	45.14	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
1vqoA	240	45.16	b.34.5.3,b.40.4.5	120361,120362
1sc3B	88	45.37		
1l1qA	186	45.43	c.61.1.1	77653
2dkoB	103	48.20		
1y0bA	197	49.04	c.61.1.1	122476
1ok0A	74	49.32	b.5.1.1	93191
1nmeB	92	49.35		
1hoe	74	50.23		
1pdqA	72	50.48	b.34.13.2	94590
1cqmA	101	51.18	d.58.14.1	39321
2f2lX	167	52.06	d.118.1.1	132844
1uv4A	293	52.17	b.67.2.1	119705
1w5rA	278	53.75	d.3.1.5	120643
1vp2A	208	56.61	c.51.4.1	113933
1hl9A	449	56.79	b.71.1.3,c.1.8.11	90650,90651
1pysA	350	58.14	d.104.1.1	40775
2jixB	225	58.21		
1zdsA	336	58.43	b.6.1.3,b.6.1.3	124952,124953
1qb7A	236	59.60	c.61.1.1	34087
1z9nA	177	60.34		
1pfbA	55	62.47	b.34.13.2	94655
1zxfA	155	67.19	d.129.3.5	125771
1y9lA	115	67.93		
1zn8A	180	70.70	c.61.1.1	125376
2cdpA	160	70.72		
1zjrA	211	73.05		
2hftA	218	77.45	b.1.2.1,b.1.2.1	21951,21952
3cx5B	352	77.55		
3b34A	891	79.04		
1q3lA	69	80.36	b.34.13.2	111652
1oycA	400	83.45	c.1.4.1	28603
1lla	628	86.27		
2g3rA	123	87.63	b.34.9.1,b.34.9.1	134570,134571
1t3lA	337	87.75	b.34.2.1,c.37.1.1	106358,106359
2f2lA	167	88.37	d.118.1.1	132843
1gydB	315	89.69	b.67.2.1	70751