# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2bkdN 134 0.9195 2qqrA 118 1.189 1em2A 229 1.636 d.129.3.2 41321 1r7aA 504 2.711 b.71.1.1,c.1.8.1 97192,97193 1mhnA 59 2.732 b.34.9.1 84964 1mi8A 158 4.009 b.86.1.2 91279 1w7cA 747 5.076 2gfaA 119 5.915 b.34.9.1,b.34.9.1 135089,135090 2psoA 237 6.235 1wgsA 133 6.371 b.34.13.3 114622 2h8gA 267 8.756 2e5yA 133 9.137 1qtnB 95 9.695 2dkoB 103 10.01 1sc3B 88 11.17 2oqeA 660 11.62 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 1nmeB 92 11.86 1n9eA 787 11.98 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 1y9lA 115 12.79 1c5cH 215 12.84 b.1.1.1,b.1.1.2 20475,21439 2yrvA 117 15.12 2qe7H 135 17.14 2nwfA 141 17.40 2gduA 504 18.48 b.71.1.1,c.1.8.1 135032,135033 2hftA 218 18.76 b.1.2.1,b.1.2.1 21951,21952 2hbwA 235 18.77 2r55A 231 19.10 1wznA 252 19.58 c.66.1.43 121525 2bjrA 368 20.46 b.169.1.1,b.169.1.1 128628,128629 1kt6A 183 21.61 b.60.1.1 84466 1edgA 380 21.88 c.1.8.3 28807 1at0 145 21.91 1xu1R 42 22.71 g.24.1.2 116036 2ivwA 113 23.24 1pdqA 72 23.54 b.34.13.2 94590 2f5kA 102 23.97 b.34.13.3 132995 2aaaA 484 24.41 b.71.1.1,c.1.8.1 27777,28764 1g8lA 411 25.38 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1q3lA 69 25.49 b.34.13.2 111652 2c5uA 375 27.14 1pyoB 105 27.33 1qwdA 177 28.72 b.60.1.1 96471 1jhfA 202 28.76 a.4.5.2,b.87.1.1 63057,63058 1ehsA 48 29.14 g.2.1.1 43998 2hqxA 246 30.29 b.34.9.1 136675 2e63A 170 30.68 2g3rA 123 31.26 b.34.9.1,b.34.9.1 134570,134571 1xr4A 509 31.80 c.124.1.2,c.124.1.2 115860,115861 1ecrA 309 32.05 e.2.1.1 42678 1kmkA 406 33.87 c.67.1.3 68696 2o0rA 411 34.16 2b3jA 159 34.48 c.97.1.2 127787 2arhA 203 35.64 d.108.1.9 127197 1lcyA 325 35.64 b.36.1.4,b.47.1.1 73834,73835 1qb7A 236 36.79 c.61.1.1 34087 2opkA 112 37.41 3c1aA 315 37.62 2hc8A 113 39.13 1zdsA 336 39.74 b.6.1.3,b.6.1.3 124952,124953 1f42A 306 40.16 b.1.1.4,b.1.2.1,b.1.2.1 59636,59637,59638 2j2zA 218 40.18 b.1.11.1,b.7.2.1 137974,137975 1am2A 199 41.58 b.86.1.2 28381 1hoe 74 42.79 2pspA 106 44.70 g.16.1.1,g.16.1.1 44730,44731 1j0fA 100 45.40 c.47.1.14 90739 1louA 101 46.64 d.58.14.1 39323 1wgzA 510 47.46 1pfbA 55 49.81 b.34.13.2 94655 1gwmA 153 49.99 b.18.1.19 83348 2z9iA 324 50.02 1d2oA 187 50.05 b.3.5.1,b.3.5.1 22625,22626 1lla 628 50.27 1y0bA 197 50.80 c.61.1.1 122476 1avqA 228 51.23 c.52.1.13 33326 1c4rA 182 51.60 b.29.1.4 24229 1vqoK 132 52.30 b.39.1.1 120372 1snrA 341 55.48 b.6.1.3,b.6.1.3 105823,105824 2qdxA 257 55.55 1ok0A 74 55.60 b.5.1.1 93191 1vqoA 240 58.12 b.34.5.3,b.40.4.5 120361,120362 1z3aA 168 58.30 c.97.1.2 124396 1at0A 145 60.87 b.86.1.1 28374 2fp3A 316 63.80 1oycA 400 64.47 c.1.4.1 28603 1nnvA 110 65.64 d.17.7.1 92012 1uv4A 293 66.03 b.67.2.1 119705 1rl2A 137 67.74 b.34.5.3,b.40.4.5 24610,25342 1ul7A 102 69.40 d.129.6.1 99540 1wryA 121 70.20 2oh5A 248 70.35 1z65A 30 71.32 2yvpA 182 71.91 1ybyA 215 72.08 2a28A 54 72.43 1aqb 183 72.80 2nqrA 411 74.14 b.85.6.1,b.103.1.1,c.57.1.2 138490,138491,138492 2i5nL 273 74.94 f.26.1.1 137066 3chvA 284 75.59 1xgsA 295 75.68 a.4.5.25,d.127.1.1 16216,41153 3c2qA 345 75.89 1zn8A 180 75.91 c.61.1.1 125376 1q1gA 276 76.44 c.56.2.1 95574 1fjgQ 105 77.23 b.40.4.5 25352 1z1zA 131 77.51 d.323.1.1 124366 2cdpA 160 77.85 2bsxA 253 77.92 c.56.2.1 129128 1w5rA 278 78.34 d.3.1.5 120643 1xniA 118 79.03 b.34.9.1,b.34.9.1 115582,115583 2pthA 193 80.17 c.56.3.1 33793 1nkr 201 83.38 1rzhL 281 83.42 f.26.1.1 98164 1msoB 30 84.71 g.1.1.1 85092 3b3qE 197 85.07 2fug5 207 85.52 2jn9A 105 85.73 1b8oA 284 85.82 c.56.2.1 33762 1m70A 190 86.15 a.3.1.4,a.3.1.4 91200,91201 1gvhA 396 86.18 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1sx5A 244 86.72 c.52.1.2 99023 1dxrL 273 86.75 f.26.1.1 43431 2hd9A 145 88.99 1x84A 189 89.33 d.113.1.2 121795