# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1edgA	380	2.289	c.1.8.3	28807
1em2A	229	2.934	d.129.3.2	41321
1r7aA	504	3.198	b.71.1.1,c.1.8.1	97192,97193
2bkdN	134	3.302		
1mhnA	59	4.895	b.34.9.1	84964
2qqrA	118	9.99		
1jj2B	337	11.23	b.43.3.2	63086
1louA	101	16.30	d.58.14.1	39323
2yrvA	117	17.58		
2hqxA	246	17.84	b.34.9.1	136675
1qtnB	95	19.82		
2dkoB	103	20.73		
1nmeB	92	20.96		
1qwdA	177	21.46	b.60.1.1	96471
1sc3B	88	21.77		
2f2lX	167	22.77	d.118.1.1	132844
2r55A	231	23.27		
2gduA	504	26.56	b.71.1.1,c.1.8.1	135032,135033
1y9lA	115	28.38		
1cqmA	101	29.25	d.58.14.1	39321
1wgsA	133	29.61	b.34.13.3	114622
2j01E	206	32.75		
1oycA	400	35.56	c.1.4.1	28603
1pdqA	72	36.82	b.34.13.2	94590
1mi8A	158	38.77	b.86.1.2	91279
1kmkA	406	38.94	c.67.1.3	68696
1wznA	252	41.40	c.66.1.43	121525
2gfaA	119	41.43	b.34.9.1,b.34.9.1	135089,135090
3chvA	284	42.42		
1xu1R	42	44.54	g.24.1.2	116036
1pyoB	105	46.08		
1vecA	206	46.35	c.37.1.19	100575
1vp2A	208	46.71	c.51.4.1	113933
1n9eA	787	48.87	b.30.2.1,d.17.2.1,d.17.2.1	91708,91709,91710
2r6hA	290	49.59		
1w7cA	747	50.05		
2h8gA	267	51.54		
2f5kA	102	52.17	b.34.13.3	132995
2jepA	395	52.49		
1vqoB	338	53.34	b.43.3.2	120363
1pfbA	55	55.05	b.34.13.2	94655
2arcA	164	55.26	b.82.4.1	28148
1hoe	74	55.77		
2psoA	237	55.87		
1ok0A	74	57.64	b.5.1.1	93191
3besR	250	57.77		
1zjrA	211	67.78		
2ouxA	286	70.09		
1ehsA	48	71.28	g.2.1.1	43998
1q3lA	69	71.67	b.34.13.2	111652
2jixB	225	71.84		
1v0aA	178	72.41	b.18.1.30	119815
1avqA	228	75.59	c.52.1.13	33326
1zdsA	336	75.95	b.6.1.3,b.6.1.3	124952,124953
1kt6A	183	81.63	b.60.1.1	84466
1gvhA	396	82.15	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
2ivwA	113	82.32		
2hftA	218	84.58	b.1.2.1,b.1.2.1	21951,21952
2e6xA	69	87.30		
2bjrA	368	88.59	b.169.1.1,b.169.1.1	128628,128629
1iznB	277	89.79	e.43.1.2	83848