# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1edgA	380	1.639	c.1.8.3	28807
2bkdN	134	3.187		
1r7aA	504	3.211	b.71.1.1,c.1.8.1	97192,97193
1em2A	229	3.427	d.129.3.2	41321
2qqrA	118	5.840		
1mhnA	59	6.528	b.34.9.1	84964
1jj2B	337	9.420	b.43.3.2	63086
2hqxA	246	12.52	b.34.9.1	136675
2jepA	395	14.51		
2f2lX	167	15.29	d.118.1.1	132844
1qwdA	177	18.86	b.60.1.1	96471
1louA	101	19.02	d.58.14.1	39323
1wgsA	133	20.22	b.34.13.3	114622
2gduA	504	24.17	b.71.1.1,c.1.8.1	135032,135033
2yrvA	117	25.43		
1v0aA	178	26.08	b.18.1.30	119815
1wznA	252	27.11	c.66.1.43	121525
2arcA	164	27.98	b.82.4.1	28148
1vp2A	208	28.58	c.51.4.1	113933
1qtnB	95	28.65		
1kmkA	406	30.64	c.67.1.3	68696
2j01E	206	30.80		
1sc3B	88	33.67		
1nmeB	92	34.03		
3chvA	284	34.65		
2dkoB	103	35.31		
2gfaA	119	35.93	b.34.9.1,b.34.9.1	135089,135090
1cqmA	101	39.35	d.58.14.1	39321
1zjrA	211	39.91		
2r55A	231	40.03		
1avqA	228	42.94	c.52.1.13	33326
1oycA	400	43.77	c.1.4.1	28603
1vqoB	338	46.50	b.43.3.2	120363
1pdqA	72	46.73	b.34.13.2	94590
1xu1R	42	46.77	g.24.1.2	116036
2r6hA	290	47.69		
2jixB	225	57.62		
1d2eA	397	59.52	b.43.3.1,b.44.1.1,c.37.1.8	25701,25741,32136
2hftA	218	62.20	b.1.2.1,b.1.2.1	21951,21952
1z9nA	177	66.56		
1vecA	206	67.70	c.37.1.19	100575
1kt6A	183	69.14	b.60.1.1	84466
1pyoB	105	69.62		
1w5rA	278	71.61	d.3.1.5	120643
1iznB	277	71.83	e.43.1.2	83848
1mi8A	158	72.27	b.86.1.2	91279
1l1qA	186	73.26	c.61.1.1	77653
1y9lA	115	76.15		
2ivwA	113	76.58		
1gvhA	396	78.52	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
1zxfA	155	78.67	d.129.3.5	125771
1pfbA	55	79.69	b.34.13.2	94655
2h8gA	267	81.79		
1hoe	74	82.12		
2rkqA	169	87.23		
1ok0A	74	88.32	b.5.1.1	93191
2ouxA	286	89.68		
3besR	250	89.81