# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1em2A	229	2.586	d.129.3.2	41321
1edgA	380	3.084	c.1.8.3	28807
2bkdN	134	4.212		
1mhnA	59	6.057	b.34.9.1	84964
1r7aA	504	6.274	b.71.1.1,c.1.8.1	97192,97193
1jj2B	337	7.671	b.43.3.2	63086
2qqrA	118	8.498		
2hqxA	246	13.92	b.34.9.1	136675
1louA	101	20.72	d.58.14.1	39323
2r55A	231	24.75		
1wgsA	133	25.53	b.34.13.3	114622
1vp2A	208	26.24	c.51.4.1	113933
2f2lX	167	27.58	d.118.1.1	132844
2jepA	395	29.47		
1qtnB	95	33.18		
2yrvA	117	34.39		
1qwdA	177	35.09	b.60.1.1	96471
1cqmA	101	35.50	d.58.14.1	39321
1wznA	252	37.13	c.66.1.43	121525
1kmkA	406	39.26	c.67.1.3	68696
2dkoB	103	39.40		
1vqoB	338	40.31	b.43.3.2	120363
2gfaA	119	40.43	b.34.9.1,b.34.9.1	135089,135090
2h8gA	267	41.46		
2j01E	206	41.76		
3chvA	284	42.09		
1y9lA	115	43.12		
1z9nA	177	43.43		
1sc3B	88	43.52		
1xu1R	42	43.96	g.24.1.2	116036
1nmeB	92	44.16		
2arcA	164	46.27	b.82.4.1	28148
2gduA	504	49.84	b.71.1.1,c.1.8.1	135032,135033
1v0aA	178	50.19	b.18.1.30	119815
2r6hA	290	50.79		
1oycA	400	52.35	c.1.4.1	28603
1vecA	206	53.33	c.37.1.19	100575
1pdqA	72	54.09	b.34.13.2	94590
2hftA	218	55.00	b.1.2.1,b.1.2.1	21951,21952
2jixB	225	57.57		
2aqpA	164	63.27		
1avqA	228	67.09	c.52.1.13	33326
1frpA	335	67.16	e.7.1.1	42875
1d2eA	397	70.40	b.43.3.1,b.44.1.1,c.37.1.8	25701,25741,32136
1lla	628	71.61		
1zdsA	336	71.75	b.6.1.3,b.6.1.3	124952,124953
1mi8A	158	75.93	b.86.1.2	91279
3besR	250	78.08		
1ok0A	74	79.10	b.5.1.1	93191
1hoe	74	79.54		
1w5rA	278	80.04	d.3.1.5	120643
1xfdA	723	81.69	b.70.3.1,c.69.1.24	115251,115252
1gvhA	396	84.02	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
1pyoB	105	84.20		
1zxfA	155	86.61	d.129.3.5	125771
2ouxA	286	88.97		
1pfbA	55	89.03	b.34.13.2	94655