# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2bkdN	134	1.560		
1dk8A	147	15.85	a.91.1.1	18548
2ouxA	286	16.53		
1jj2B	337	20.59	b.43.3.2	63086
1fzqA	181	20.61	c.37.1.8	32060
1mhnA	59	20.72	b.34.9.1	84964
1wgsA	133	28.05	b.34.13.3	114622
2eryA	172	28.71	c.37.1.8	132306
2qqrA	118	30.73		
1xr4A	509	31.35	c.124.1.2,c.124.1.2	115860,115861
1qwdA	177	31.86	b.60.1.1	96471
2dyqA	144	33.09		
2dkoB	103	35.50		
2yvyA	278	35.56		
1em2A	229	36.07	d.129.3.2	41321
2nzhA	113	37.09		
2jn9A	105	37.28		
1pdqA	72	40.51	b.34.13.2	94590
2b2yA	187	43.53	b.34.13.2,b.34.13.2	127754,127755
1z1zA	131	44.46	d.323.1.1	124366
1o3yA	166	45.06	c.37.1.8	86618
1uptA	171	45.83	c.37.1.8	99767
1fxjA	331	46.79	b.81.1.4,c.68.1.5	28062,34520
1kshA	186	47.19	c.37.1.8	72914
2fug5	207	48.49		
1wmsA	177	49.52	c.37.1.8	109414
1nmeB	92	51.89		
2r55A	231	52.67		
2e5yA	133	54.29		
1wleA	501	56.73		
2q2iA	116	56.80		
2yrvA	117	58.11		
1qtnB	95	58.18		
1r8sA	164	58.92	c.37.1.8	97247
1edgA	380	64.17	c.1.8.3	28807
2j01E	206	68.26		
2fp3A	316	71.26		
1gd7A	109	72.57	b.40.4.4	60441
1j5uA	136	73.07	d.208.1.1	71584
2bf5A	98	73.75	d.137.1.1	128405
1mr3F	181	80.44	c.37.1.8	79422
1mi8A	158	80.60	b.86.1.2	91279
2nr3A	183	82.43		
2hftA	218	84.54	b.1.2.1,b.1.2.1	21951,21952
3bz6A	183	89.99